Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G252700.1 | Wheat | nucleus | 62.34 | 63.47 |
| TraesCS3B01G281600.1 | Wheat | nucleus | 60.81 | 62.89 |
| TraesCS3A01G252200.1 | Wheat | nucleus | 61.58 | 62.69 |
| KXG33221 | Sorghum | nucleus | 66.67 | 62.68 |
| HORVU3Hr1G066600.2 | Barley | nucleus | 63.1 | 61.23 |
| Zm00001d043699_P001 | Maize | nucleus | 62.6 | 58.29 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 24.17 | 56.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.28 | 43.59 |
| Os05t0541400-00 | Rice | nucleus | 41.98 | 39.66 |
| Bra001826.1-P | Field mustard | nucleus | 26.72 | 32.41 |
| CDY32423 | Canola | nucleus | 26.97 | 32.12 |
| Bra031275.1-P | Field mustard | nucleus | 26.97 | 31.93 |
| CDY51449 | Canola | nucleus | 26.97 | 31.93 |
| CDY62045 | Canola | nucleus | 26.97 | 31.64 |
| Os09t0455300-01 | Rice | nucleus | 18.58 | 30.93 |
| CDY48884 | Canola | nucleus | 25.7 | 30.15 |
| PGSC0003DMT400006453 | Potato | nucleus | 28.75 | 29.27 |
| Solyc03g121240.1.1 | Tomato | nucleus | 27.74 | 28.68 |
| Os01t0566800-00 | Rice | nucleus | 33.84 | 28.54 |
| AT3G21330.1 | Thale cress | nucleus | 26.72 | 28.15 |
| KRH23349 | Soybean | nucleus | 30.03 | 26.22 |
| KRH09982 | Soybean | nucleus | 29.01 | 25.62 |
| KRH47179 | Soybean | nucleus | 27.99 | 25.52 |
| VIT_09s0002g02700.t01 | Wine grape | nucleus | 30.28 | 25.27 |
| KRH44227 | Soybean | nucleus | 27.48 | 24.38 |
| Os08t0108500-01 | Rice | nucleus | 17.3 | 22.22 |
| Os01t0831000-01 | Rice | nucleus | 10.69 | 19.53 |
| Os12t0589000-00 | Rice | nucleus | 13.99 | 18.09 |
| Os02t0710300-01 | Rice | nucleus | 12.21 | 16.0 |
| Os06t0496400-01 | Rice | nucleus | 11.7 | 15.65 |
| Os07t0588400-00 | Rice | nucleus | 10.94 | 14.58 |
| Os01t0111500-01 | Rice | nucleus | 10.94 | 14.58 |
| Os03t0205300-00 | Rice | nucleus | 12.21 | 14.08 |
| Os11t0634700-00 | Rice | extracellular | 10.94 | 11.98 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:4327679 | EMBL:AK106119 | ProteinID:BAB86530.1 | ProteinID:BAB92339.1 |
| ProteinID:BAF05936.1 | ProteinID:BAS73951.1 | ncoils:Coil | ProteinID:EAZ13271.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os01g0707500 | EnsemblPlants:Os01t0707500-01 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF288 | UniProt:Q8S0N2 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000009E915 |
| RefSeq:XP_015629328.1 | RefSeq:XP_015629336.1 | RefSeq:XP_015629344.1 | InterPro:bHLH_dom | SEG:seg | : |
Description
basic helix-loop-helix protein 118Similar to Transcription factor LAX PANICLE. (Os01t0707500-01);Similar to Transcription factor LAX PANICLE. (Os01t0707500-02);Non-protein coding transcript. (Os01t0707500-03)
Coordinates
chr1:-:29382708..29385646
Molecular Weight (calculated)
40299.0 Da
IEP (calculated)
7.057
GRAVY (calculated)
-0.320
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: METFGWAGGG QLMHHDDIYL PRSVGCGRPF ELDDAFLGAC FGAQLQCDGG VGGGDGGGCL QGTSGFGAVA GDPLGLLCSG DVFASVAEGA GGAHDDGLLD
101: AALAFSRNQL GGAACDGSDG GAVSNGAMLS SYSGTTGGNI SSGESNNYSG GGGGYDAEVV SPTSTMSAAT QSLHPKRKLY DDHHHPAGIA AAAAAPPLAP
201: CPRPTTGAVA AKRRASTSAT SITFGHQPHH HHAGATTAGY EPDMEAMAQV KEMIYRAAAM RPVHLGTEAA ADKPRRKNVR ISSDPQTVAA RLRRERVSDR
301: LRVLQKLVPG GNKMDTASML DEAASYLKFL KSQVQKLETL GTTTTTSKLP QQYYSGNINS SNNHHGFLGF AANNNTISAG YANSNAGNAT KLL
101: AALAFSRNQL GGAACDGSDG GAVSNGAMLS SYSGTTGGNI SSGESNNYSG GGGGYDAEVV SPTSTMSAAT QSLHPKRKLY DDHHHPAGIA AAAAAPPLAP
201: CPRPTTGAVA AKRRASTSAT SITFGHQPHH HHAGATTAGY EPDMEAMAQV KEMIYRAAAM RPVHLGTEAA ADKPRRKNVR ISSDPQTVAA RLRRERVSDR
301: LRVLQKLVPG GNKMDTASML DEAASYLKFL KSQVQKLETL GTTTTTSKLP QQYYSGNINS SNNHHGFLGF AANNNTISAG YANSNAGNAT KLL
001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
Arabidopsis Description
BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.