Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0805250-00 | |
| Os06t0164400-01 | |
| Os09t0455300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G50330.1 | Os09t0455300-01 | AT3G50330.1 | 21798944 |
| AT3G50330.1 | Os02t0805250-00 | AT4G36930.1 | 17855426 |
| AT3G50330.1 | Os06t0164400-01 | AT4G36930.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G237500.1 | Wheat | nucleus | 72.46 | 72.77 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 72.03 | 72.34 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 71.19 | 71.49 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 71.19 | 71.49 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 71.19 | 70.59 |
| Zm00001d020705_P001 | Maize | nucleus | 70.34 | 68.59 |
| EER96848 | Sorghum | nucleus | 71.19 | 64.37 |
| Solyc12g088790.1.1 | Tomato | nucleus | 32.2 | 62.81 |
| PGSC0003DMT400048857 | Potato | nucleus | 35.59 | 56.76 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 51.69 | 49.8 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 39.83 | 45.85 |
| CDY18636 | Canola | nucleus | 39.41 | 45.37 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 39.41 | 44.93 |
| Bra036071.1-P | Field mustard | nucleus | 39.41 | 43.66 |
| CDY30593 | Canola | nucleus | 38.98 | 43.19 |
| CDY12799 | Canola | nucleus | 39.83 | 43.12 |
| CDY01443 | Canola | nucleus | 39.83 | 42.92 |
| Bra012128.1-P | Field mustard | nucleus | 39.83 | 42.92 |
| CDY43559 | Canola | nucleus | 41.1 | 41.99 |
| CDY63952 | Canola | nucleus | 41.1 | 41.99 |
| Bra036801.1-P | Field mustard | nucleus | 41.1 | 41.99 |
| CDY17765 | Canola | nucleus | 39.41 | 41.15 |
| CDX83121 | Canola | nucleus | 39.83 | 40.87 |
| Bra030002.1-P | Field mustard | nucleus | 39.83 | 40.87 |
| AT3G50330.1 | Thale cress | nucleus | 39.83 | 40.69 |
| AT5G67060.1 | Thale cress | nucleus | 41.53 | 40.66 |
| CDX68583 | Canola | nucleus | 38.98 | 40.53 |
| KRH28464 | Soybean | nucleus | 41.53 | 40.5 |
| PGSC0003DMT400010344 | Potato | nucleus | 37.71 | 39.73 |
| KRH77007 | Soybean | nucleus | 41.95 | 39.44 |
| KRH57944 | Soybean | nucleus | 38.56 | 35.83 |
| KRH04603 | Soybean | nucleus | 40.68 | 34.04 |
| Os08t0108500-01 | Rice | nucleus | 37.29 | 28.76 |
| Os01t0831000-01 | Rice | nucleus | 21.19 | 23.26 |
| Os01t0707500-01 | Rice | nucleus | 30.93 | 18.58 |
| Os05t0541400-00 | Rice | nucleus | 30.08 | 17.07 |
| Os01t0566800-00 | Rice | nucleus | 30.08 | 15.24 |
| Os06t0496400-01 | Rice | nucleus | 18.64 | 14.97 |
| Os02t0710300-01 | Rice | nucleus | 18.64 | 14.67 |
| Os12t0589000-00 | Rice | nucleus | 18.22 | 14.14 |
| Os01t0111500-01 | Rice | nucleus | 16.95 | 13.56 |
| Os07t0588400-00 | Rice | nucleus | 16.53 | 13.22 |
| Os11t0634700-00 | Rice | extracellular | 19.49 | 12.81 |
| Os03t0205300-00 | Rice | nucleus | 18.22 | 12.61 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:4347252 | EMBL:AK060477 | EMBL:AK070458 | ProteinID:BAD38280.1 |
| ProteinID:BAD38453.1 | ProteinID:BAF25271.1 | ProteinID:BAT08424.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os09g0455300 | EnsemblPlants:Os09t0455300-01 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF74 | UniProt:Q67TR8 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000042650A |
| RefSeq:XP_015610996.1 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
basic helix-loop-helix protein 120Similar to INDEHISCENT protein. (Os09t0455300-01)
Coordinates
chr9:+:17132211..17133470
Molecular Weight (calculated)
25349.1 Da
IEP (calculated)
6.806
GRAVY (calculated)
-0.317
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFDLFNSYP ESQLDLMSTM LQLEQLTALS DQSLFMAAPT SPPVSPMGTP SPQFSPPPQM SVTTTTAGGG YQDQYNSMPA TYGAGAGVHQ LDFAMSSPGS
101: DSGAPQGSSS SSSSEAMREM IFHIAALQPV EIDPEAVRPP KRRNVRISKD PQSVAARLRR ERISERIRIL QRLVPGGTKM DTASMLDEAI HYVKFLKSQV
201: QSLERAAAAT GAAAHRAAAF GAAYPAALPM QHHAPW
101: DSGAPQGSSS SSSSEAMREM IFHIAALQPV EIDPEAVRPP KRRNVRISKD PQSVAARLRR ERISERIRIL QRLVPGGTKM DTASMLDEAI HYVKFLKSQV
201: QSLERAAAAT GAAAHRAAAF GAAYPAALPM QHHAPW
001: MDSDIMNMMM HQMEKLPEFC NPNSSFFSPD HNNTYPFLFN STHYQSDHSM TNEPGFRYGS GLLTNPSSIS PNTAYSSVFL DKRNNSNNNN NGTNMAAMRE
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
Arabidopsis Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.