CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68583
CDX69281
CDX75629
CDX83121
CDY17765
CDY22448
CDY30593
CDY44048

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50330.1	CDX68583	AT3G50330.1	21798944
AT3G50330.1	CDX83121	AT3G50330.1	21798944
AT3G50330.1	CDY17765	AT3G50330.1	21798944
AT3G50330.1	CDY30593	AT3G50330.1	21798944
AT3G50330.1	CDX69281	AT4G36930.1	17855426
AT3G50330.1	CDX75629	AT4G36930.1	17855426
AT3G50330.1	CDY22448	AT4G36930.1	17855426
AT3G50330.1	CDY44048	AT4G36930.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036071.1-P	Field mustard	nucleus	88.05	93.43
CDY30593	Canola	nucleus	87.17	92.49
CDX83121	Canola	nucleus	87.61	86.09
CDX68583	Canola	nucleus	86.28	85.9
AT3G50330.1	Thale cress	nucleus	83.19	81.39
CDY18636	Canola	nucleus	65.04	71.71
CDX81342	Canola	cytoskeleton, cytosol, nucleus	64.6	70.53
Solyc12g088790.1.1	Tomato	nucleus	36.73	68.59
CDY43559	Canola	nucleus	69.03	67.53
CDY63952	Canola	nucleus	67.7	66.23
CDY12799	Canola	nucleus	62.83	65.14
CDY01443	Canola	nucleus	62.39	64.38
PGSC0003DMT400048857	Potato	nucleus	36.73	56.08
KRH28464	Soybean	nucleus	51.33	47.93
KRH77007	Soybean	nucleus	50.44	45.42
PGSC0003DMT400010344	Potato	nucleus	44.69	45.09
TraesCS7D01G263400.1	Wheat	nucleus	41.59	42.73
KRH57944	Soybean	nucleus	47.79	42.52
HORVU7Hr1G054880.1	Barley	nucleus	41.59	42.34
TraesCS7A01G262600.1	Wheat	nucleus	41.15	42.27
TraesCS7B01G160500.1	Wheat	nucleus	40.71	41.63
KRH04603	Soybean	nucleus	50.88	40.78
Os09t0455300-01	Rice	nucleus	41.15	39.41
CDX91916	Canola	cytosol	30.09	38.2
Zm00001d050016_P001	Maize	nucleus	40.71	38.17
GSMUA_Achr9P15380_001	Banana	nucleus	41.15	37.96
TraesCS5A01G237500.1	Wheat	nucleus	38.94	37.45
TraesCS5D01G244000.1	Wheat	nucleus	38.94	37.45
HORVU5Hr1G068110.1	Barley	nucleus	39.38	37.4
CDX74329	Canola	cytosol	30.09	37.36
TraesCS5B01G235200.1	Wheat	nucleus	38.5	37.02
TraesCS6A01G142000.1	Wheat	nucleus	38.5	37.02
Zm00001d020705_P001	Maize	nucleus	38.94	36.36
Zm00001d031781_P001	Maize	nucleus	39.82	35.86
CDX85799	Canola	nucleus	33.19	35.05
EES15124	Sorghum	nucleus	41.59	34.94
CDY64847	Canola	nucleus	33.19	34.88
Zm00001d005841_P001	Maize	nucleus	37.17	34.71
EER96848	Sorghum	nucleus	39.82	34.48
CDY21597	Canola	nucleus	32.3	32.74
CDY66929	Canola	nucleus, plastid	20.8	26.55
CDY55900	Canola	nucleus, plastid	20.8	26.55
CDY51449	Canola	nucleus	31.42	21.39
CDY32423	Canola	nucleus	30.97	21.21
CDY62045	Canola	nucleus	30.97	20.9
CDY48884	Canola	nucleus	30.97	20.9
CDX90106	Canola	nucleus	19.03	20.19
CDY15706	Canola	nucleus	18.58	19.81
CDY27630	Canola	nucleus	19.47	18.18
CDX84906	Canola	nucleus	19.47	18.03
CDY03948	Canola	cytosol	11.5	17.93
CDY11768	Canola	nucleus	19.91	17.58
CDY11802	Canola	nucleus	17.7	17.39
CDY55674	Canola	nucleus	19.47	15.17
CDX68049	Canola	nucleus	19.03	14.83
CDX96145	Canola	nucleus	19.03	14.83
CDY11694	Canola	nucleus	19.03	14.83
CDY61813	Canola	nucleus	19.03	14.1
CDY58387	Canola	nucleus	19.03	14.01
CDX69011	Canola	nucleus	19.03	12.39
CDY28328	Canola	nucleus	19.47	12.36
CDY49379	Canola	nucleus	19.03	12.29
CDX72435	Canola	nucleus	19.03	12.29
CDX75386	Canola	nucleus	18.58	12.1
CDX81461	Canola	nucleus	16.81	10.98
CDY37221	Canola	nucleus	16.81	10.98
CDY48431	Canola	nucleus	15.04	10.59
CDY03946	Canola	nucleus	7.52	6.18

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078FTA1	UniProt:A0A078FTA1	EnsemblPlants:CDY17765	ProteinID:CDY17765
ProteinID:CDY17765.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00002012001
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF74	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EB930C	InterPro:bHLH_dom	SEG:seg

Description

BnaC08g21730DBnaC08g21730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTA1]

Coordinates

chrLK032077:-:434320..435000

Molecular Weight (calculated)

25451.0 Da

IEP (calculated)

10.506

GRAVY (calculated)

-0.541

Length

226 amino acids

Sequence
(BLAST)

001: MDNSDILMNM MMTQMGKLPD HFSNPIPNPS SHNIMMPSES NTYHPFFFNH NNHIHPPVLN PTITLHHQPG LNFRYAPSTS SFIPDKRRGG GDNADMAAMR
101: EMIFRIAVMQ PIHIDPESVK PPKRKNVRIS KDPQSVAARH RRERISERIR ILQRLVPGGT KMDTASMLDE AIHYVKFLKK QVQSMEEHAV VNGGGMTPAP
201: LVVGGKGCGS MRSDHHQMLG NAHILR

Best Arabidopsis Sequence Match ( AT3G50330.1 )
(BLAST)

001: MDNSDILMNM MMQQMEKLPE HFSNSNPNPN PHNIMMLSES NTHPFFFNPT HSHLPFDQTM PHHQPGLNFR YAPSPSSSLP EKRGGCSDNA NMAAMREMIF
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R

Arabidopsis Description

HEC2Transcription factor HEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SND4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.