Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011740.1-P | Field mustard | nucleus, plastid | 97.4 | 95.2 |
| CDX69281 | Canola | nucleus, plastid | 94.51 | 93.7 |
| CDY22448 | Canola | nucleus, plastid | 78.61 | 77.27 |
| CDY44048 | Canola | nucleus, plastid | 75.14 | 76.25 |
| AT4G36930.1 | Thale cress | nucleus | 80.92 | 75.07 |
| GSMUA_Achr9P11300_001 | Banana | nucleus | 13.01 | 71.43 |
| CDY37185 | Canola | mitochondrion | 17.63 | 62.24 |
| TraesCS6A01G190600.1 | Wheat | nucleus | 18.79 | 50.39 |
| CDY24734 | Canola | plastid | 16.76 | 40.85 |
| CDY01438 | Canola | nucleus, plastid | 25.14 | 39.91 |
| CDY12804 | Canola | nucleus, plastid | 24.86 | 39.81 |
| PGSC0003DMT400010253 | Potato | nucleus | 40.17 | 36.97 |
| Solyc02g093280.2.1 | Tomato | nucleus | 39.31 | 35.98 |
| Os06t0164400-01 | Rice | cytosol, mitochondrion, nucleus | 19.94 | 35.03 |
| GSMUA_Achr8P15670_001 | Banana | nucleus | 31.79 | 31.16 |
| GSMUA_Achr10P... | Banana | plastid | 30.64 | 30.9 |
| OQU75890 | Sorghum | nucleus | 25.43 | 30.24 |
| Os02t0805250-00 | Rice | nucleus | 23.41 | 28.93 |
| KXG31309 | Sorghum | nucleus | 23.99 | 28.42 |
| TraesCS7D01G124700.1 | Wheat | nucleus | 27.75 | 28.4 |
| TraesCS7A01G126900.1 | Wheat | nucleus | 27.17 | 28.4 |
| TraesCS7B01G026300.1 | Wheat | nucleus | 27.46 | 28.02 |
| HORVU7Hr1G026560.2 | Barley | nucleus | 26.59 | 27.22 |
| Zm00001d045212_P001 | Maize | nucleus | 25.72 | 26.25 |
| HORVU6Hr1G088020.4 | Barley | nucleus | 22.25 | 26.01 |
| TraesCS6D01G357700.1 | Wheat | nucleus | 22.25 | 25.93 |
| Zm00001d018416_P001 | Maize | mitochondrion | 24.28 | 25.45 |
| TraesCS6A01G373500.2 | Wheat | nucleus | 22.25 | 25.41 |
| TraesCS6B01G411300.1 | Wheat | nucleus | 21.68 | 24.75 |
| CDY65390 | Canola | nucleus | 14.74 | 24.4 |
| CDY00603 | Canola | nucleus, plastid | 17.63 | 22.26 |
| CDY67566 | Canola | nucleus, plastid | 17.63 | 22.26 |
| CDY35224 | Canola | nucleus | 15.9 | 21.24 |
| CDY20289 | Canola | nucleus | 12.72 | 20.85 |
| CDX83214 | Canola | nucleus | 19.94 | 19.83 |
| CDX91917 | Canola | nucleus | 19.65 | 19.6 |
| CDX67873 | Canola | nucleus | 17.05 | 19.22 |
| CDX74328 | Canola | nucleus | 21.1 | 18.86 |
| CDY55014 | Canola | nucleus | 15.61 | 18.69 |
| CDY11836 | Canola | nucleus | 15.03 | 18.18 |
| CDY65446 | Canola | nucleus | 17.34 | 18.13 |
| CDY21498 | Canola | nucleus | 20.23 | 18.09 |
| CDY02785 | Canola | nucleus | 15.03 | 17.57 |
| CDY32733 | Canola | nucleus | 15.32 | 17.55 |
| CDY31989 | Canola | nucleus | 23.99 | 17.44 |
| CDY14866 | Canola | nucleus | 20.23 | 17.37 |
| CDX88653 | Canola | nucleus | 15.03 | 17.33 |
| CDY30375 | Canola | nucleus | 20.23 | 17.24 |
| CDY62262 | Canola | nucleus | 15.03 | 17.22 |
| CDY29961 | Canola | nucleus | 19.94 | 16.95 |
| CDX70453 | Canola | nucleus | 19.94 | 16.95 |
| CDY05725 | Canola | nucleus | 24.28 | 16.57 |
| CDX83509 | Canola | nucleus | 19.65 | 16.46 |
| CDY28232 | Canola | nucleus | 15.32 | 16.21 |
| CDY06870 | Canola | nucleus | 21.1 | 16.04 |
| CDY35220 | Canola | nucleus | 17.05 | 15.9 |
| CDX68710 | Canola | nucleus | 15.03 | 15.9 |
| CDY42809 | Canola | nucleus | 18.79 | 15.7 |
| CDY06865 | Canola | nucleus | 16.18 | 15.6 |
| CDX80064 | Canola | nucleus | 17.92 | 15.5 |
| CDY50911 | Canola | nucleus | 12.14 | 15.5 |
| CDY66254 | Canola | nucleus | 17.63 | 15.25 |
| CDY06026 | Canola | nucleus | 19.36 | 15.16 |
| CDX71916 | Canola | nucleus | 19.36 | 15.12 |
| CDY34780 | Canola | nucleus | 14.74 | 15.09 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 26.01 | 15.03 |
| CDX76819 | Canola | nucleus | 14.74 | 15.0 |
| CDX91293 | Canola | nucleus | 12.72 | 14.77 |
| CDY22636 | Canola | nucleus | 20.81 | 14.66 |
| CDY46133 | Canola | nucleus | 8.09 | 14.66 |
| CDX83349 | Canola | nucleus | 17.05 | 14.6 |
| CDY18011 | Canola | nucleus | 12.72 | 14.47 |
| CDX94963 | Canola | nucleus | 20.81 | 14.46 |
| CDX97278 | Canola | nucleus | 12.43 | 14.38 |
| CDY06867 | Canola | nucleus | 19.94 | 14.32 |
| CDY21898 | Canola | nucleus | 12.43 | 14.29 |
| CDY06358 | Canola | nucleus | 20.23 | 14.26 |
| CDY22062 | Canola | nucleus | 12.43 | 14.14 |
| CDY64745 | Canola | nucleus | 20.52 | 14.14 |
| CDX90930 | Canola | nucleus | 12.43 | 13.87 |
| CDY18143 | Canola | nucleus | 11.85 | 13.4 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 7.8 | 13.3 |
| CDX89919 | Canola | nucleus | 11.85 | 13.18 |
| CDX76616 | Canola | extracellular | 13.01 | 12.57 |
| CDY11401 | Canola | extracellular | 12.72 | 12.5 |
| CDY35222 | Canola | nucleus | 18.79 | 11.27 |
| CDY46132 | Canola | endoplasmic reticulum | 5.2 | 10.23 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078CHU2 | EnsemblPlants:CDX75629 | ProteinID:CDX75629 | ProteinID:CDX75629.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00121547001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF284 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EF49F2 | InterPro:bHLH_dom | SEG:seg |
Description
BnaA01g00730D
Coordinates
chrLK031804:-:1983091..1984990
Molecular Weight (calculated)
37560.4 Da
IEP (calculated)
6.721
GRAVY (calculated)
-0.718
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDNKKLISS SSSSTNTSIY DTRGNNSNNH HHHHPPSSSD EISQFLRHIF DRSSPLPSYY SPAMTTTTST AAIGVQGDPH ADNPRSFVST TPASKRAVDF
101: SDVLIGSAAA AAGCYGFPGG GNNIAQGSSS GTRVSSSSIG ASGNETDEYD CESEEGVEAV VDDELPSKSR NSSKRCRAAE VHNLSEKRRR SRINEKMKAL
201: QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGLN LHPLCLPGTS LHPLQLSQIR PPETSNDPLL NHSNQYASTS NAPDMINMPS AYTMEPSIRS
301: HFGPFPHFTP PVEMSREGGL THQRLNTSGE HAAFDGQHPE IKDRLT
101: SDVLIGSAAA AAGCYGFPGG GNNIAQGSSS GTRVSSSSIG ASGNETDEYD CESEEGVEAV VDDELPSKSR NSSKRCRAAE VHNLSEKRRR SRINEKMKAL
201: QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGLN LHPLCLPGTS LHPLQLSQIR PPETSNDPLL NHSNQYASTS NAPDMINMPS AYTMEPSIRS
301: HFGPFPHFTP PVEMSREGGL THQRLNTSGE HAAFDGQHPE IKDRLT
001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
Arabidopsis Description
SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.