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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS5A01G237500.1
TraesCS5B01G235200.1
TraesCS5D01G244000.1
TraesCS6A01G142000.1
TraesCS7A01G262600.1
TraesCS7A01G323000.1
TraesCS7B01G160500.1
TraesCS7B01G223900.1
TraesCS7D01G263400.1
TraesCS7D01G319600.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G36930.1 TraesCS5A01G237500.1 AT3G50330.1 17855426
AT4G36930.1 TraesCS5B01G235200.1 AT3G50330.1 17855426
AT4G36930.1 TraesCS5D01G244000.1 AT3G50330.1 17855426
AT4G36930.1 TraesCS6A01G142000.1 AT3G50330.1 17855426
AT4G36930.1 TraesCS7A01G262600.1 AT3G50330.1 17855426
AT4G36930.1 TraesCS7B01G160500.1 AT3G50330.1 17855426
AT4G36930.1 TraesCS7D01G263400.1 AT3G50330.1 17855426
AT4G36930.1 TraesCS7A01G323000.1 AT5G09750.1 17855426
AT4G36930.1 TraesCS7B01G223900.1 AT5G09750.1 17855426
AT4G36930.1 TraesCS7D01G319600.1 AT5G09750.1 17855426
AT4G36930.1 TraesCS5A01G237500.1 AT5G67060.1 17855426
AT4G36930.1 TraesCS5B01G235200.1 AT5G67060.1 17855426
AT4G36930.1 TraesCS5D01G244000.1 AT5G67060.1 17855426
AT4G36930.1 TraesCS6A01G142000.1 AT5G67060.1 17855426
AT4G36930.1 TraesCS7A01G262600.1 AT5G67060.1 17855426
AT4G36930.1 TraesCS7B01G160500.1 AT5G67060.1 17855426
AT4G36930.1 TraesCS7D01G263400.1 AT5G67060.1 17855426
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7B01G026300.1 Wheat nucleus 96.37 94.1
TraesCS7D01G124700.1 Wheat nucleus 95.77 93.79
HORVU7Hr1G026560.2 Barley nucleus 94.26 92.31
OQU75890 Sorghum nucleus 61.93 70.45
TraesCS6A01G190600.1 Wheat nucleus 25.98 66.67
Os06t0164400-01 Rice cytosol, mitochondrion, nucleus 36.86 61.93
CDY37185 Canola mitochondrion 17.22 58.16
Zm00001d045212_P001 Maize nucleus 59.21 57.82
KRH04595 Soybean nucleus 30.51 37.13
KRH04711 Soybean plastid 17.22 35.62
CDY24734 Canola plastid 14.8 34.51
KRH28453 Soybean nucleus 29.61 33.68
Bra012133.1-P Field mustard nucleus, plastid 21.45 33.18
CDY12804 Canola nucleus, plastid 21.45 32.87
CDY01438 Canola nucleus, plastid 21.45 32.57
AT5G67110.1 Thale cress nucleus 20.54 32.38
Solyc04g078690.2.1 Tomato nucleus 30.21 31.85
PGSC0003DMT400020534 Potato nucleus 29.91 31.53
TraesCS6A01G373500.2 Wheat nucleus 27.49 30.03
KRH05665 Soybean nucleus 26.89 29.97
VIT_07s0031g00450.t01 Wine grape nucleus, plastid 35.65 29.95
CDY44048 Canola nucleus, plastid 30.51 29.62
Bra010591.1-P Field mustard nucleus, plastid 30.51 29.62
KRH77016 Soybean nucleus 32.93 29.07
KRH15381 Soybean nucleus 25.98 28.96
VIT_18s0001g10270.t01 Wine grape nucleus 31.72 28.46
CDY22448 Canola nucleus, plastid 30.21 28.41
CDX75629 Canola nucleus 28.4 27.17
TraesCS2A01G461700.2 Wheat nucleus 15.41 27.13
PGSC0003DMT400010253 Potato nucleus 30.51 26.86
Bra011740.1-P Field mustard nucleus, plastid 28.7 26.84
AT4G36930.1 Thale cress nucleus 30.21 26.81
Solyc02g093280.2.1 Tomato nucleus 30.51 26.72
CDX69281 Canola nucleus, plastid 27.79 26.36
TraesCS5A01G049600.1 Wheat nucleus 18.43 18.15
TraesCS2A01G253900.2 Wheat nucleus 18.73 17.32
GSMUA_Achr7P20810_001 Banana nucleus 28.4 15.69
TraesCS5A01G441900.1 Wheat nucleus 13.29 15.66
TraesCS5A01G420200.1 Wheat nucleus 19.64 15.48
TraesCS6A01G358400.3 Wheat nucleus 17.22 14.69
TraesCS5A01G376500.1 Wheat nucleus 21.15 14.37
TraesCS7A01G147500.1 Wheat nucleus 16.62 13.82
TraesCS1A01G212700.1 Wheat nucleus 18.73 13.63
TraesCS1A01G083000.1 Wheat nucleus 19.03 12.43
TraesCS5A01G225700.1 Wheat nucleus 16.62 12.01
TraesCS7A01G157700.1 Wheat nucleus 13.9 9.58
Protein Annotations
EnsemblPlants:TraesCS7A01G126900.1EnsemblPlantsGene:TraesCS7A01G126900Gene3D:4.10.280.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638InterPro:bHLH_domncoils:Coil
PANTHER:PTHR12565PANTHER:PTHR12565:SF297PFAM:PF00010PFscan:PS50888SEG:segSMART:SM00353
SUPFAM:SSF47459TIGR:cd00083MapMan:15.5.32:::
Description
No Description!
Coordinates
chr7A:+:81632449..81634346
Molecular Weight (calculated)
36211.5 Da
IEP (calculated)
7.053
GRAVY (calculated)
-0.807
Length
331 amino acids
Sequence
(BLAST)
001: MEERRDEGFG GGGAVRELVL MQQERRRRRE EEEEEVRRQM FGGGAAFHAA AAAAALGQQH QHQQAEYGEL GGGAFYESEA GGSSEPEPHG ASDRPRGGGG
101: SGSKRTRAAE VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLSMRNGVY LNPSYLSGAL EPVQASQMFA ALGVSGRNVV
201: APSSGAVAPP VNQSSGAHHS FDPMNSPQQN QPQPLVLPSC PKTTIPEPPF HLESSQPHLQ SFQLPESSEM MLRGDIMLKH HLTSAQDRAD PSGNKMNSLR
301: QESSMLNTHF DGCSRSKEQS HDMVPANTRH V
Best Arabidopsis Sequence Match ( AT4G36930.1 )
(BLAST)
001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
Arabidopsis Description
SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.