Factsheet for TraesCS6A01G358400.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G341200.1	Wheat	nucleus	89.69	97.21
TraesCS6B01G391100.1	Wheat	nucleus	87.89	94.99
HORVU6Hr1G085500.3	Barley	nucleus	85.31	91.44
KRH72281	Soybean	nucleus, plastid	18.04	56.0
TraesCS7A01G147500.1	Wheat	nucleus	52.06	50.75
CDY20290	Canola	endoplasmic reticulum, extracellular	24.23	46.31
CDY46132	Canola	endoplasmic reticulum	20.62	45.45
TraesCS5A01G441900.1	Wheat	nucleus	30.41	41.99
OQU89497	Sorghum	nucleus	49.48	41.29
TraesCS5A01G225700.1	Wheat	nucleus	48.45	41.05
CDY46133	Canola	nucleus	16.75	34.03
TraesCS6A01G190600.1	Wheat	nucleus	9.79	29.46
TraesCS7A01G157700.1	Wheat	nucleus	32.22	26.04
TraesCS2A01G461700.2	Wheat	nucleus	11.34	23.4
TraesCS6A01G373500.2	Wheat	nucleus	14.18	18.15
TraesCS7A01G126900.1	Wheat	nucleus	14.69	17.22
TraesCS2A01G253900.2	Wheat	nucleus	14.95	16.2
TraesCS5A01G049600.1	Wheat	nucleus	13.66	15.77
TraesCS5A01G420200.1	Wheat	nucleus	14.18	13.1
TraesCS5A01G376500.1	Wheat	nucleus	15.46	12.32
TraesCS1A01G212700.1	Wheat	nucleus	13.66	11.65
TraesCS1A01G083000.1	Wheat	nucleus	15.21	11.64

Protein Annotations

EnsemblPlants:TraesCS6A01G358400.3	EnsemblPlantsGene:TraesCS6A01G358400	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:588455510..588458923

Molecular Weight (calculated)

40079.2 Da

IEP (calculated)

5.924

GRAVY (calculated)

-0.416

Length

388 amino acids

Sequence
(BLAST)

001: MQPAGREMHG GGQGQDDFFE QMLSALPTAW AELGSVRPPW ELQAAGAPPH DGDPGFDESA LLASRLRHNQ ISGGGGDDKP PPAMLPRHGL DGGGFLPLPL
101: FTDRSREDLQ GANQALFDGF GAAGMHAAGA AQPPFGQVSQ EPPPRPALAL FRVSSVALTE LCLLSPRASK AGSMPPPAAQ GGAAAPPRQR QRARRGQATD
201: PHSIAERLRR ERIAERMKAL QELVPNANKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG AAAVGPLVAG LSSESSGNGN GTSSSGDGNG DDDNGGSTLR
301: ATEQQVARLM EEDMGTAMQY LQGKGLCLMP ISLASVISSA TSSSLRSATR PAGNAGGPLH EGGSPASPQL VNSMGTDGSR TIGDGSGQ

Best Arabidopsis Sequence Match ( AT2G24260.1 )
(BLAST)

001: MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.