CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72281	Soybean	nucleus, plastid	16.13	60.0
EES05953	Sorghum	nucleus	45.59	53.94
TraesCS6B01G391100.1	Wheat	nucleus	41.51	53.76
TraesCS6D01G341200.1	Wheat	nucleus	41.29	53.63
HORVU6Hr1G085500.3	Barley	nucleus	41.29	53.04
TraesCS6A01G358400.3	Wheat	nucleus	41.29	49.48
CDY20290	Canola	endoplasmic reticulum, extracellular	21.51	49.26
OQU88567	Sorghum	nucleus	29.03	48.74
EER89334	Sorghum	nucleus	45.59	47.43
CDY46132	Canola	endoplasmic reticulum	17.85	47.16
KXG37359	Sorghum	nucleus	28.39	46.48
CDY46133	Canola	nucleus	16.13	39.27
KXG30460	Sorghum	nucleus	28.6	26.28
KXG19523	Sorghum	nucleus	27.74	26.22
EES11436	Sorghum	nucleus	10.32	25.53
KXG31309	Sorghum	nucleus	11.83	18.84
OQU75890	Sorghum	nucleus	10.97	17.53
OQU88421	Sorghum	nucleus	12.9	14.53
KXG23955	Sorghum	nucleus	13.98	13.68
OQU92150	Sorghum	nucleus	14.84	12.85
OQU91282	Sorghum	nucleus	14.19	12.22
KXG37432	Sorghum	plastid	12.47	12.03
KXG32305	Sorghum	nucleus	15.27	11.76
KXG21255	Sorghum	nucleus	15.7	10.61

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1W0W528	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
EnsemblPlants:OQU89497	ProteinID:OQU89497	ProteinID:OQU89497.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223
PANTHER:PTHR16223:SF28	SMART:SM00353	EnsemblPlantsGene:SORBI_3002G202600	SUPFAM:SSF47459	UniParc:UPI0009DC8728	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:59246635..59249747

Molecular Weight (calculated)

46145.5 Da

IEP (calculated)

7.004

GRAVY (calculated)

-0.256

Length

465 amino acids

Sequence
(BLAST)

001: MQPTTREMQA MAAAGQISLD DLRAAAGAAG GGVHDDFLDQ MLGGLPPSAW PELASAAGGK APDGGAQAEG MQQHQHQHQH FGGGLYDESA LLASRLRQHQ
101: ISGGPTGGGA EAAKQMVLQQ LADLRQGHHM LLQGMGRSTG GGGGSGDGGL LLPLSLGSGG SGGDVQALLK AAANSAGGEA AGVFGGSFAG SLQQQQQQHF
201: QSHPQQQTAP LPGQGFGGGG GGAGASGGVS QPQAGAAGGG AAAPPRQRVR ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY
301: VKFLQLQVKV LSMSRLGGAA AVAPLVADMS SEGRGGAGAA AAAGSDGGLA VTEQQVAKLM EEDMGTAMQY LQGKGLCLMP VSLASAISSA TCHMRPPVGA
401: AGLGVAAAAA HHMAAMRLPP HGMNGGAGAD ASAMANGAGA GGADGDASHS QQQQHSKDAA SVSKP

Best Arabidopsis Sequence Match ( AT2G24260.2 )
(BLAST)

001: MNQQGQTQTQ TQPQASASTA TGGTVAAPPQ SRTKIRARRG QATDPHSIAE RLRRERIAER MKALQELVPN GNKTDKASML DEIIDYVKFL QLQVKVLSMS
101: RLGGAASVSS QISEAGGSHG NASSAMVGGS QTAGNSNDSV TMTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCHSRNPLI PGAVADVGGP
201: SPPNLSGMTI QSTSTKMGSG NGKLNGNGVT ERSSSIAVKE AVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.