CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033267_P001	Maize	nucleus	82.78	81.57
TraesCS5B01G380200.1	Wheat	nucleus	58.15	70.25
TraesCS5A01G376500.1	Wheat	nucleus	62.04	68.79
TraesCS5D01G386500.1	Wheat	nucleus	62.04	64.92
HORVU5Hr1G093310.11	Barley	nucleus	62.04	61.24
KXG23955	Sorghum	nucleus	38.15	43.37
GSMUA_Achr6P31370_001	Banana	nucleus	23.33	33.87
EES11436	Sorghum	nucleus	11.3	32.45
GSMUA_Achr6P30080_001	Banana	nucleus	22.59	30.42
GSMUA_Achr5P02280_001	Banana	nucleus	27.96	27.76
KXG31309	Sorghum	nucleus	14.26	26.37
OQU88421	Sorghum	nucleus	19.81	25.91
GSMUA_Achr4P31770_001	Banana	nucleus	26.85	24.45
OQU75890	Sorghum	nucleus	12.59	23.37
KXG32305	Sorghum	nucleus	23.52	21.03
KXG37359	Sorghum	nucleus	10.0	19.01
OQU88567	Sorghum	nucleus	9.44	18.41
EES05953	Sorghum	nucleus	13.15	18.07
KXG37432	Sorghum	plastid	16.11	18.05
OQU92150	Sorghum	nucleus	16.67	16.76
KXG21255	Sorghum	nucleus	20.56	16.13
EER89334	Sorghum	nucleus	12.96	15.66
OQU89497	Sorghum	nucleus	12.22	14.19
KXG19523	Sorghum	nucleus	10.56	11.59
KXG30460	Sorghum	nucleus	10.37	11.07

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	UniProt:A0A1Z5S5S3	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:OQU91282
ProteinID:OQU91282	ProteinID:OQU91282.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF194
SMART:SM00353	EnsemblPlantsGene:SORBI_3001G158900	SUPFAM:SSF47459	unigene:Sbi.9072	UniParc:UPI000B4252B9	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:12928593..12934275

Molecular Weight (calculated)

55915.9 Da

IEP (calculated)

6.570

GRAVY (calculated)

-0.367

Length

540 amino acids

Sequence
(BLAST)

001: MNQFVPDWSN MGDTSRPLGE DDDLIELLWC NGHVVMQSQT HRKVPPRPEK QAAVVAPAPP APASVPQEDE GGLWFPFALA DSLDKDIFSE FFYEAPAPAA
101: VAAAAAPVAP VASGGVGTET DAGKSCRDDV PAGADRRGAC PVVSEDPCDL MPPPKSTPAS CSRQQTMSLP NGGGDNAGDL SDLVVRAGSA GKSAAAAAAV
201: AEAGASSMLS AIGSSICGSN QVLVQRAVGA PGRASGSGSG TANANAMGGG RGNEASSSGR STYCFGTATT TTTTTTTTEP TSTSNRSSKR KRLDTEDSES
301: PSEDAESESA AMLARKPPQK MTTARRSRAA EVHNLSERRR RDRINEKMRA LQELIPHCNK TDKASMLDEA IEYLKSLQLQ VQATCIQMMW MGSGIAAPPA
401: VMFPGVHQYL SRMGVGMGPA AAMPSMPRLP FMAAPQPVVP PNAQVNPVPG YRGHHHMPAA VGMAEPYGHY LGVNHLQPPP SQHYAQGVGY YPPPLGAKAV
501: QQQAPELHHV PGPGASMPAG AGAAAPGVLL PESAPSRGPG

Best Arabidopsis Sequence Match ( AT2G20180.4 )
(BLAST)

001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG

Arabidopsis Description

PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.