CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031044_P001	Maize	nucleus	50.95	60.65
Os12t0610200-01	Rice	nucleus	56.21	60.0
TraesCS5A01G049600.1	Wheat	nucleus	36.84	52.08
TraesCS5B01G054800.2	Wheat	nucleus	36.0	50.44
TraesCS5D01G060300.1	Wheat	nucleus	35.37	48.0
HORVU5Hr1G011780.1	Barley	nucleus	34.11	47.51
OQU91282	Sorghum	nucleus	43.37	38.15
EES11436	Sorghum	nucleus	12.63	31.91
GSMUA_Achr6P30080_001	Banana	nucleus	25.68	30.42
GSMUA_Achr6P31370_001	Banana	nucleus	23.79	30.38
KXG31309	Sorghum	nucleus	15.58	25.34
OQU75890	Sorghum	nucleus	15.37	25.09
GSMUA_Achr5P02280_001	Banana	nucleus	28.42	24.82
OQU88421	Sorghum	nucleus	21.47	24.7
GSMUA_Achr4P31770_001	Banana	nucleus	30.74	24.62
EES05953	Sorghum	nucleus	15.58	18.83
OQU88567	Sorghum	nucleus	10.74	18.41
KXG32305	Sorghum	nucleus	23.37	18.38
KXG37359	Sorghum	nucleus	10.95	18.31
OQU92150	Sorghum	nucleus	18.11	16.01
EER89334	Sorghum	nucleus	14.95	15.88
KXG37432	Sorghum	plastid	15.79	15.56
OQU89497	Sorghum	nucleus	13.68	13.98
KXG21255	Sorghum	nucleus	19.58	13.52
KXG19523	Sorghum	nucleus	11.58	11.18
KXG30460	Sorghum	nucleus	10.95	10.28

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	UniProt:A0A1B6PE59	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KXG23955	ProteinID:KXG23955	ProteinID:KXG23955.1
ProteinID:KXG23956.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF194	SMART:SM00353
EnsemblPlantsGene:SORBI_3008G163700	SUPFAM:SSF47459	TMHMM:TMhelix	UniParc:UPI00081AC7FB	InterPro:bHLH_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:59717935..59724027

Molecular Weight (calculated)

50387.4 Da

IEP (calculated)

5.103

GRAVY (calculated)

-0.457

Length

475 amino acids

Sequence
(BLAST)

001: MRCSHSLTER QPAMNQYISD WSGAMGDTFA LPLGLGGGGG GGEDDDGLIE LMWCNGHVVM QSQAAPRSNK PPRPDKAAPA AAAVQEDDDA AAQAWFQEQY
101: PVEEEDPLER DDLFSELFGE AQAAVDGARG ACSCKEEAEE DARQSISGMM PPPPPMRPRD DKACTGDASL DAATATEGAE SSMLTIGSSF CGSNHVQTTT
201: GGAGTDVVVV VARARGAATD TSSATRSRSC TTRNEHPCPG AAAAAAAAHR SGKRKQSVDA TDAEDVEFES ADVTCEPAHK TATAKRRRAA EVHNLSERRR
301: RDRINEKMKA LQELIPHCNK TDKASMLDEA IEYLKSLQLQ LQMMWMGGGM AAAAAPVVFP AGVHQYMQRM VAAGPAPPPH MASMPAMPFM APPPAVQAPP
401: LPDLYARYLA VDHHLPPLPP MVASPYTSAM GFYQRQNPAL PPLPAVPAPA PSPSDGILHK KYENCGKPEI QGITG

Best Arabidopsis Sequence Match ( AT2G43010.4 )
(BLAST)

001: MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQVRPIR
401: SRVY

Arabidopsis Description

PIF4phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.