Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36930.1 | EER96848 | AT3G50330.1 | 17855426 |
| AT4G36930.1 | EES15124 | AT3G50330.1 | 17855426 |
| AT4G36930.1 | EES14382 | AT5G09750.1 | 17855426 |
| AT4G36930.1 | EER96848 | AT5G67060.1 | 17855426 |
| AT4G36930.1 | EES15124 | AT5G67060.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018416_P001 | Maize | mitochondrion | 86.3 | 76.36 |
| Os02t0805250-00 | Rice | nucleus | 60.62 | 63.21 |
| TraesCS6D01G357700.1 | Wheat | nucleus | 57.53 | 56.57 |
| TraesCS6A01G373500.2 | Wheat | nucleus | 58.56 | 56.44 |
| CDY37185 | Canola | mitochondrion | 18.84 | 56.12 |
| TraesCS6B01G411300.1 | Wheat | nucleus | 57.88 | 55.78 |
| HORVU6Hr1G088020.4 | Barley | nucleus | 56.16 | 55.41 |
| KRH04711 | Soybean | plastid | 19.52 | 35.62 |
| KRH04595 | Soybean | nucleus | 30.82 | 33.09 |
| OQU75890 | Sorghum | nucleus | 31.51 | 31.62 |
| KRH28453 | Soybean | nucleus | 31.51 | 31.62 |
| AT5G67110.1 | Thale cress | nucleus | 21.58 | 30.0 |
| CDY24734 | Canola | plastid | 14.38 | 29.58 |
| Bra012133.1-P | Field mustard | nucleus, plastid | 21.58 | 29.44 |
| CDY01438 | Canola | nucleus, plastid | 21.58 | 28.9 |
| CDY12804 | Canola | nucleus, plastid | 21.23 | 28.7 |
| KRH05665 | Soybean | nucleus | 29.11 | 28.62 |
| KRH15381 | Soybean | nucleus | 28.77 | 28.28 |
| EES11436 | Sorghum | nucleus | 18.15 | 28.19 |
| Solyc04g078690.2.1 | Tomato | nucleus | 27.74 | 25.8 |
| PGSC0003DMT400020534 | Potato | nucleus | 27.4 | 25.48 |
| KRH77016 | Soybean | nucleus | 32.19 | 25.07 |
| VIT_07s0031g00450.t01 | Wine grape | nucleus, plastid | 33.22 | 24.62 |
| Bra010591.1-P | Field mustard | nucleus, plastid | 28.08 | 24.05 |
| CDY44048 | Canola | nucleus, plastid | 28.08 | 24.05 |
| CDX75629 | Canola | nucleus | 28.42 | 23.99 |
| CDY22448 | Canola | nucleus, plastid | 28.77 | 23.86 |
| VIT_18s0001g10270.t01 | Wine grape | nucleus | 29.79 | 23.58 |
| Bra011740.1-P | Field mustard | nucleus, plastid | 28.08 | 23.16 |
| CDX69281 | Canola | nucleus, plastid | 27.4 | 22.92 |
| PGSC0003DMT400010253 | Potato | nucleus | 29.11 | 22.61 |
| AT4G36930.1 | Thale cress | nucleus | 28.42 | 22.25 |
| Solyc02g093280.2.1 | Tomato | nucleus | 28.77 | 22.22 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 41.1 | 20.03 |
| KXG23955 | Sorghum | nucleus | 25.34 | 15.58 |
| OQU88421 | Sorghum | nucleus | 21.58 | 15.25 |
| OQU88567 | Sorghum | nucleus | 14.04 | 14.8 |
| KXG37359 | Sorghum | nucleus | 14.04 | 14.44 |
| OQU91282 | Sorghum | nucleus | 26.37 | 14.26 |
| EES05953 | Sorghum | nucleus | 18.49 | 13.74 |
| KXG32305 | Sorghum | nucleus | 26.71 | 12.91 |
| OQU92150 | Sorghum | nucleus | 22.95 | 12.48 |
| OQU89497 | Sorghum | nucleus | 18.84 | 11.83 |
| EER89334 | Sorghum | nucleus | 17.47 | 11.41 |
| KXG21255 | Sorghum | nucleus | 24.66 | 10.47 |
| KXG37432 | Sorghum | plastid | 17.12 | 10.37 |
| KXG19523 | Sorghum | nucleus | 16.44 | 9.76 |
| KXG30460 | Sorghum | nucleus | 15.41 | 8.89 |
Protein Annotations
| EnsemblPlants:KXG31309 | EnsemblPlantsGene:SORBI_3004G336700 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF306 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:KXG31309 | ProteinID:KXG31309.1 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0007F215FD | UniProt:A0A194YST9 | MapMan:15.5.32 | : | : |
Description
hypothetical protein
Coordinates
chr4:-:66857855..66860461
Molecular Weight (calculated)
32166.3 Da
IEP (calculated)
6.408
GRAVY (calculated)
-0.599
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAQQQQLDL VMRHQSMATV YESEDALGSS ESDPARPARP RGKRSRAAEV HNLSEKRRRS RINEKMKALQ TLIPNSSKTD KASMLDDAIE YLKQLQLQVQ
101: MLSMRNGLYL PPGNLSGVPE ALASSEMCAA LNQSGAKASN SGAVVLPGNQ IPVARLLFDL PNHDQRHENP LVLQSVPSSS TAVEPQFLQE PAQPNLQSFQ
201: LALPPEMLFK EDMMLEHRLT SAQETTSLPG HEAKPGRQEA RMVNSDLFDR GSLGKERAQD LMPKNTESVL FMPYLHSLQS GDAEGSLRAG SN
101: MLSMRNGLYL PPGNLSGVPE ALASSEMCAA LNQSGAKASN SGAVVLPGNQ IPVARLLFDL PNHDQRHENP LVLQSVPSSS TAVEPQFLQE PAQPNLQSFQ
201: LALPPEMLFK EDMMLEHRLT SAQETTSLPG HEAKPGRQEA RMVNSDLFDR GSLGKERAQD LMPKNTESVL FMPYLHSLQS GDAEGSLRAG SN
001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
Arabidopsis Description
SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.