Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006788.1-P | Field mustard | nucleus | 98.0 | 98.0 |
| CDY11836 | Canola | nucleus | 91.0 | 95.45 |
| CDY02785 | Canola | nucleus | 84.33 | 85.47 |
| CDY55014 | Canola | nucleus | 81.67 | 84.78 |
| CDY62262 | Canola | nucleus | 84.33 | 83.77 |
| AT5G58010.1 | Thale cress | nucleus | 80.33 | 81.14 |
| CDY32733 | Canola | nucleus | 80.67 | 80.13 |
| CDY46132 | Canola | endoplasmic reticulum | 25.0 | 42.61 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 28.67 | 42.36 |
| CDY28232 | Canola | nucleus | 43.0 | 39.45 |
| CDX68710 | Canola | nucleus | 42.67 | 39.14 |
| CDY37185 | Canola | mitochondrion | 12.33 | 37.76 |
| CDX76819 | Canola | nucleus | 42.67 | 37.65 |
| CDY34780 | Canola | nucleus | 42.0 | 37.28 |
| CDX91293 | Canola | nucleus | 34.67 | 34.9 |
| CDY21898 | Canola | nucleus | 34.0 | 33.89 |
| CDY22062 | Canola | nucleus | 34.0 | 33.55 |
| CDY18011 | Canola | nucleus | 34.0 | 33.55 |
| CDX97278 | Canola | nucleus | 33.33 | 33.44 |
| CDX90930 | Canola | nucleus | 33.67 | 32.58 |
| CDY20289 | Canola | nucleus | 22.67 | 32.23 |
| CDY18143 | Canola | nucleus | 32.33 | 31.7 |
| CDX89919 | Canola | nucleus | 32.33 | 31.19 |
| CDY24734 | Canola | plastid | 12.67 | 26.76 |
| CDY46133 | Canola | nucleus | 16.67 | 26.18 |
| GSMUA_Achr9P18080_001 | Banana | nucleus | 37.33 | 23.09 |
| Os06t0193400-01 | Rice | nucleus | 36.67 | 23.01 |
| Zm00001d016873_P001 | Maize | nucleus | 37.0 | 22.7 |
| KXG30460 | Sorghum | nucleus | 37.67 | 22.33 |
| KXG19523 | Sorghum | nucleus | 35.67 | 21.75 |
| TraesCS7A01G157700.1 | Wheat | nucleus | 34.67 | 21.67 |
| TraesCS7B01G062100.2 | Wheat | nucleus | 34.67 | 21.67 |
| TraesCS7D01G158300.1 | Wheat | nucleus | 34.67 | 21.67 |
| VIT_11s0016g00380.t01 | Wine grape | nucleus | 38.67 | 21.64 |
| Zm00001d045046_P001 | Maize | nucleus | 34.67 | 21.62 |
| HORVU7Hr1G032420.3 | Barley | nucleus | 34.33 | 21.41 |
| CDY12804 | Canola | nucleus, plastid | 15.33 | 21.3 |
| CDY01438 | Canola | nucleus, plastid | 15.33 | 21.1 |
| GSMUA_Achr3P10120_001 | Banana | nucleus | 38.33 | 21.1 |
| Os02t0564700-01 | Rice | nucleus | 36.33 | 20.8 |
| CDY65390 | Canola | nucleus | 14.33 | 20.57 |
| Zm00001d037098_P003 | Maize | nucleus | 35.0 | 20.15 |
| CDY35224 | Canola | nucleus | 15.0 | 17.37 |
| CDY00603 | Canola | nucleus, plastid | 15.0 | 16.42 |
| CDY67566 | Canola | nucleus, plastid | 15.0 | 16.42 |
| CDX91917 | Canola | nucleus | 18.33 | 15.85 |
| CDY22448 | Canola | nucleus, plastid | 18.33 | 15.62 |
| CDY44048 | Canola | nucleus, plastid | 17.67 | 15.54 |
| CDX83214 | Canola | nucleus | 18.0 | 15.52 |
| CDX75629 | Canola | nucleus | 17.33 | 15.03 |
| CDX69281 | Canola | nucleus, plastid | 17.0 | 14.61 |
| CDX74328 | Canola | nucleus | 18.0 | 13.95 |
| CDY21498 | Canola | nucleus | 17.33 | 13.44 |
| CDX80064 | Canola | nucleus | 16.67 | 12.5 |
| CDY66254 | Canola | nucleus | 16.67 | 12.5 |
| CDY14866 | Canola | nucleus | 16.67 | 12.41 |
| CDY35220 | Canola | nucleus | 15.33 | 12.4 |
| CDX67873 | Canola | nucleus | 12.67 | 12.38 |
| CDX70453 | Canola | nucleus | 16.67 | 12.29 |
| CDY29961 | Canola | nucleus | 16.67 | 12.29 |
| CDY06865 | Canola | nucleus | 14.67 | 12.26 |
| CDY31989 | Canola | nucleus | 19.33 | 12.18 |
| CDY50911 | Canola | nucleus | 11.0 | 12.18 |
| CDX83349 | Canola | nucleus | 16.33 | 12.13 |
| CDX83509 | Canola | nucleus | 16.67 | 12.11 |
| CDY30375 | Canola | nucleus | 16.33 | 12.07 |
| CDY05725 | Canola | nucleus | 20.0 | 11.83 |
| CDY65446 | Canola | nucleus | 13.0 | 11.78 |
| CDY42809 | Canola | nucleus | 15.67 | 11.35 |
| CDY06026 | Canola | nucleus | 16.67 | 11.31 |
| CDX71916 | Canola | nucleus | 16.67 | 11.29 |
| CDY06870 | Canola | nucleus | 17.0 | 11.21 |
| CDY22636 | Canola | nucleus | 17.33 | 10.59 |
| CDX94963 | Canola | nucleus | 17.0 | 10.24 |
| CDY11401 | Canola | extracellular | 12.0 | 10.23 |
| CDY06867 | Canola | nucleus | 16.33 | 10.17 |
| CDY64745 | Canola | nucleus | 17.0 | 10.16 |
| CDX76616 | Canola | extracellular | 12.0 | 10.06 |
| CDY06358 | Canola | nucleus | 16.33 | 9.98 |
| CDY35222 | Canola | nucleus | 16.0 | 8.32 |
Protein Annotations
| EnsemblPlants:CDX88653 | EnsemblPlantsGene:GSBRNA2T00148696001 | Gene3D:4.10.280.10 | GO:A0A078DN63 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF28 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX88653 | ProteinID:CDX88653.1 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE44AB | MapMan:15.5.32 | : |
Description
BnaA03g09960D
Coordinates
chrLK031856:-:352474..353729
Molecular Weight (calculated)
32013.8 Da
IEP (calculated)
6.527
GRAVY (calculated)
-0.524
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MHEEAKEEDR RQEEMENGNG EGKGEFITQN NNGFFDSMSM LSSLPPPWGS SLPPSPPPPH SLLHALTESG GPTTGSQDGL QHAQGTVSTT TSPPVARQKP
101: RVRARRGQAT DPHSIAERLR RERIAERMKS LQELVPNTNK TDKASMLDEI IEYVRFLQLQ VKVLSMSRLG AARTVGPRLN GLTSEVGGRL NALSVPSNGV
201: VNGNGNATGS SNESLRSTEQ RVAKLMEEDM GSAMQYLQGK GLCLMPIALA TAMSSSSAHS RGALFNPISN IVATEEANVV VAAAPEASSP MDDVSASNKA
101: RVRARRGQAT DPHSIAERLR RERIAERMKS LQELVPNTNK TDKASMLDEI IEYVRFLQLQ VKVLSMSRLG AARTVGPRLN GLTSEVGGRL NALSVPSNGV
201: VNGNGNATGS SNESLRSTEQ RVAKLMEEDM GSAMQYLQGK GLCLMPIALA TAMSSSSAHS RGALFNPISN IVATEEANVV VAAAPEASSP MDDVSASNKA
001: MENGNGEGKG EFINQNNDFF LDSMSMLSSL PPCWDPSLPP PPPPPQSLFH ALAVDAPFPD QFHHPQESGG PTMGSQEGLQ PQGTVSTTSA PVVRQKPRVR
101: ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN
201: GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA
101: ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN
201: GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA
Arabidopsis Description
BHLH82LRL3 [Source:UniProtKB/TrEMBL;Acc:A0A178UI77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.