Factsheet for Os12t0589000-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G078800.1	Wheat	nucleus	65.79	69.2
TraesCS5B01G074500.1	Wheat	nucleus	64.47	67.59
TraesCS5A01G067600.1	Wheat	nucleus	63.82	66.9
EES17296	Sorghum	nucleus	61.18	58.86
HORVU5Hr1G018100.1	Barley	cytosol, mitochondrion, nucleus	58.88	57.37
PGSC0003DMT400030165	Potato	nucleus	24.67	41.21
Os07t0588400-00	Rice	nucleus	33.22	34.24
Os03t0205300-00	Rice	nucleus	38.16	34.02
Zm00001d041351_P001	Maize	nucleus	32.24	32.24
Solyc12g088380.1.1	Tomato	nucleus	28.29	31.05
Solyc04g077960.1.1	Tomato	nucleus	35.86	30.7
PGSC0003DMT400055446	Potato	nucleus	35.86	30.19
Os11t0634700-00	Rice	extracellular	28.62	24.23
Os02t0710300-01	Rice	nucleus	22.37	22.67
Os01t0111500-01	Rice	nucleus	20.39	21.02
Os09t0455300-01	Rice	nucleus	14.14	18.22
Os06t0496400-01	Rice	nucleus	17.43	18.03
Os01t0831000-01	Rice	nucleus	12.17	17.21
Os01t0707500-01	Rice	nucleus	18.09	13.99
Os08t0108500-01	Rice	nucleus	13.49	13.4
Os05t0541400-00	Rice	nucleus	15.13	11.06
Os01t0566800-00	Rice	nucleus	15.79	10.3

Protein Annotations

EntrezGene:107276154	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:ABA99756.1	ProteinID:BAT17867.1	ProteinID:EAZ21048.1
GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os12g0589000
EnsemblPlants:Os12t0589000-00	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF61	UniProt:Q2QMV9
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0000680D15	RefSeq:XP_015619496.1	InterPro:bHLH_dom	SEG:seg

Description

basic helix-loop-helix protein 130, ROOT HAIR DEFECTIVE-SIX LIKE 9Similar to Helix-loop-helix DNA-binding domain containing protein. (Os12t0589000-00)

Coordinates

chr12:-:24632487..24633776

Molecular Weight (calculated)

32972.1 Da

IEP (calculated)

4.644

GRAVY (calculated)

-0.578

Length

304 amino acids

Sequence
(BLAST)

001: MEGGGLIADM SWTVFDLPSH SDESEMMAQL FSAFPIHGEE EGHEQLPWFD QSSNPCYYSC NASSTAYSNS NASSIPAPSE YEGYCFSDSN EALGVSSSIA
101: PHDLSMVQVQ GATEFLNVIP NHSLDSFGNG ELGHEDLDSV SGTNKRKQSA EGEFDGQTRG SKCARKAEPK RAKKAKQTVE KDASVAIPNG SCSISDNDSS
201: SSQEVADAGA TSKGKSRAGR GAATDPQSLY ARKRRERINE RLKTLQNLVP NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DEMWMYAPIA YNGMNIGLDL
301: NIDT

Best Arabidopsis Sequence Match ( AT4G33880.1 )
(BLAST)

001: MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGAAASGDHQ GLYWNLGSHH NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPTVEENQ
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR

Arabidopsis Description

BHLH85Transcription factor bHLH85 [Source:UniProtKB/Swiss-Prot;Acc:Q84WK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.