Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g121240.1.1 | Tomato | nucleus | 93.52 | 95.0 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 22.54 | 52.1 |
| CDY32423 | Canola | nucleus | 38.08 | 44.55 |
| Bra001826.1-P | Field mustard | nucleus | 37.05 | 44.14 |
| Bra031275.1-P | Field mustard | nucleus | 37.31 | 43.37 |
| CDY51449 | Canola | nucleus | 37.31 | 43.37 |
| CDY62045 | Canola | nucleus | 37.31 | 42.99 |
| CDY48884 | Canola | nucleus | 36.79 | 42.39 |
| PGSC0003DMT400048857 | Potato | nucleus | 15.8 | 41.22 |
| AT3G21330.1 | Thale cress | nucleus | 38.6 | 39.95 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.98 | 39.56 |
| KRH47179 | Soybean | nucleus | 40.93 | 36.66 |
| PGSC0003DMT400012487 | Potato | nucleus | 36.79 | 36.41 |
| KRH09982 | Soybean | nucleus | 41.97 | 36.4 |
| VIT_09s0002g02700.t01 | Wine grape | nucleus | 43.78 | 35.88 |
| KRH23349 | Soybean | nucleus | 41.19 | 35.33 |
| KRH44227 | Soybean | nucleus | 39.64 | 34.54 |
| GSMUA_Achr8P24970_001 | Banana | nucleus | 29.02 | 32.18 |
| GSMUA_Achr3P25950_001 | Banana | nucleus | 28.76 | 31.53 |
| PGSC0003DMT400010344 | Potato | nucleus | 17.88 | 30.8 |
| EES18589 | Sorghum | nucleus | 31.35 | 30.17 |
| PGSC0003DMT400020558 | Potato | nucleus | 19.43 | 29.64 |
| TraesCS3B01G281600.1 | Wheat | nucleus | 29.02 | 29.47 |
| TraesCS3A01G252200.1 | Wheat | nucleus | 29.27 | 29.27 |
| Zm00001d038863_P001 | Maize | nucleus | 29.79 | 29.04 |
| TraesCS3D01G252700.1 | Wheat | nucleus | 29.02 | 29.02 |
| KXG33221 | Sorghum | nucleus | 31.35 | 28.95 |
| Os01t0707500-01 | Rice | nucleus | 29.27 | 28.75 |
| HORVU3Hr1G066600.2 | Barley | nucleus | 29.53 | 28.15 |
| Zm00001d043699_P001 | Maize | nucleus | 30.31 | 27.73 |
| Os05t0541400-00 | Rice | nucleus | 29.53 | 27.4 |
| Zm00001d011187_P001 | Maize | nucleus | 30.05 | 26.98 |
| TraesCS1A01G362800.1 | Wheat | nucleus | 27.2 | 26.58 |
| HORVU1Hr1G079450.1 | Barley | nucleus | 27.46 | 26.5 |
| Os01t0566800-00 | Rice | nucleus | 31.87 | 26.39 |
| TraesCS1D01G367700.1 | Wheat | nucleus | 26.94 | 25.94 |
| TraesCS1B01G380000.1 | Wheat | nucleus | 26.42 | 25.63 |
| TraesCS3B01G233700.2 | Wheat | extracellular, mitochondrion, nucleus, plastid | 30.83 | 25.37 |
| TraesCS3D01G208500.2 | Wheat | mitochondrion | 30.83 | 25.11 |
| TraesCS3A01G207300.2 | Wheat | extracellular | 30.31 | 25.05 |
| PGSC0003DMT400073760 | Potato | nucleus | 16.58 | 24.43 |
| HORVU3Hr1G048770.1 | Barley | plastid | 30.31 | 24.27 |
| Zm00001d044242_P001 | Maize | nucleus | 29.27 | 23.49 |
| OQU87026 | Sorghum | nucleus | 26.94 | 22.56 |
| PGSC0003DMT400008370 | Potato | nucleus | 10.88 | 21.21 |
| PGSC0003DMT400030165 | Potato | nucleus | 8.81 | 18.68 |
| PGSC0003DMT400089728 | Potato | nucleus | 14.51 | 18.36 |
| PGSC0003DMT400087143 | Potato | nucleus | 14.51 | 16.82 |
| PGSC0003DMT400055446 | Potato | nucleus | 15.54 | 16.62 |
| PGSC0003DMT400078776 | Potato | nucleus | 11.92 | 14.51 |
Protein Annotations
| EntrezGene:102600649 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0ZRC9 |
| PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400002515 | PGSC:PGSC0003DMG400002515 | EnsemblPlants:PGSC0003DMT400006453 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF293 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000294D8AC | RefSeq:XP_006343023.1 | RefSeq:XP_006343024.1 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002515]
Coordinates
chr3:-:60532437..60534392
Molecular Weight (calculated)
42799.2 Da
IEP (calculated)
5.149
GRAVY (calculated)
-0.546
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MENLDWNETP FSFGSSFDPI HVISNWNMPQ RQEAANRLAA DSMAAKAGTA DLTRDCTDVG FSSSPILNMP NNYISDNNPL GLMSDFGVEI VKPATGLISN
101: TVSLESIDCL LSATTTNNTD TSVEDDGMSV IFADSNSLWN SGESAGINPP AGYQQLLTCL PTDHKILEEE QNQRKRKSYE LDEAVSQSSL ANSSNEFNLF
201: QSNSLTGNFQ LISEKQSKSK KARLIETNKR PSSSNINFQQ ASSSVSSIDQ EPDPEAIAQM KEMIYRAAAF RPVDFGAEVL EKPKRKNVKI STDPQTVAAR
301: QRRERISERI RVLQRLVPGG SKMDTASMLD EAANYLKFLR SQVKALEVIG QKQDPFTSIV PFNYPIPMQL PHFPLQNPNQ IHRPKS
101: TVSLESIDCL LSATTTNNTD TSVEDDGMSV IFADSNSLWN SGESAGINPP AGYQQLLTCL PTDHKILEEE QNQRKRKSYE LDEAVSQSSL ANSSNEFNLF
201: QSNSLTGNFQ LISEKQSKSK KARLIETNKR PSSSNINFQQ ASSSVSSIDQ EPDPEAIAQM KEMIYRAAAF RPVDFGAEVL EKPKRKNVKI STDPQTVAAR
301: QRRERISERI RVLQRLVPGG SKMDTASMLD EAANYLKFLR SQVKALEVIG QKQDPFTSIV PFNYPIPMQL PHFPLQNPNQ IHRPKS
001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
Arabidopsis Description
BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.