Factsheet for Zm00001d018967_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002455_P001
Zm00001d003927_P001
Zm00001d010744_P001
Zm00001d011093_P001
Zm00001d011238_P001
Zm00001d014436_P001
Zm00001d015505_P001
Zm00001d016593_P001
Zm00001d020659_P001
Zm00001d022225_P001
Zm00001d028402_P001
Zm00001d029339_P001
Zm00001d030126_P002
Zm00001d039070_P001
Zm00001d048901_P002
Zm00001d053743_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02590.1	Zm00001d011093_P001	AT1G22630.1	21798944
AT4G02590.1	Zm00001d010744_P001	AT1G78680.1	21798944
AT4G02590.1	Zm00001d028402_P001	AT1G78680.1	21798944
AT4G02590.1	Zm00001d015505_P001	AT2G24020.1	21798944
AT4G02590.1	Zm00001d053743_P002	AT2G24020.1	21798944
AT4G02590.1	Zm00001d011238_P001	AT3G28715.1	21798944
AT4G02590.1	Zm00001d022225_P001	AT3G47640.1	21798944
AT4G02590.1	Zm00001d029339_P001	AT3G47640.1	21798944
AT4G02590.1	Zm00001d048901_P002	AT3G47640.1	21798944
AT4G02590.1	Zm00001d020659_P001	AT4G25315.1	21798944
AT4G02590.1	Zm00001d003927_P001	AT5G14070.1	21798944
AT4G02590.1	Zm00001d016593_P001	AT5G14070.1	21798944
AT4G02590.1	Zm00001d039070_P001	AT5G15802.1	21798944
AT4G02590.1	Zm00001d002455_P001	AT5G45620.1	21798944
AT4G02590.1	Zm00001d014436_P001	AT5G45620.1	21798944
AT4G02590.1	Zm00001d030126_P002	AT5G45620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88567	Sorghum	nucleus	91.23	93.86
TraesCS5B01G445900.1	Wheat	nucleus	74.39	75.44
TraesCS5D01G449200.1	Wheat	nucleus	74.39	75.44
Zm00001d013073_P002	Maize	nucleus	75.09	75.09
TraesCS5A01G441900.1	Wheat	nucleus	72.63	73.67
GSMUA_Achr5P03100_001	Banana	nucleus	66.67	69.34
HORVU5Hr1G106310.3	Barley	nucleus	73.68	67.31
KRH55381	Soybean	cytosol	15.79	65.22
GSMUA_Achr4P21070_001	Banana	nucleus	68.42	65.0
Bra036256.1-P	Field mustard	nucleus	50.53	63.16
KRH32094	Soybean	nucleus	55.44	55.83
KRG95612	Soybean	nucleus	56.84	55.48
VIT_05s0020g04620.t01	Wine grape	nucleus	60.7	55.27
VIT_07s0141g00220.t01	Wine grape	nucleus	55.79	55.02
Bra018539.1-P	Field mustard	nucleus	48.77	54.72
KRH67287	Soybean	nucleus	55.44	54.11
PGSC0003DMT400049768	Potato	nucleus	56.14	52.98
CDX91293	Canola	nucleus	55.09	52.68
Solyc09g065820.2.1	Tomato	nucleus	55.79	52.65
CDY21898	Canola	nucleus	55.44	52.49
PGSC0003DMT400034840	Potato	nucleus	54.39	52.36
CDY22062	Canola	nucleus	55.44	51.97
PGSC0003DMT400015596	Potato	nucleus	55.09	51.82
Solyc09g083220.2.1	Tomato	nucleus	55.09	51.64
AT4G02590.1	Thale cress	nucleus	56.14	51.61
Bra000872.1-P	Field mustard	nucleus	55.79	51.46
CDY18011	Canola	nucleus	54.74	51.32
VIT_14s0030g02230.t01	Wine grape	nucleus	59.3	51.06
CDX90930	Canola	nucleus	55.09	50.65
Solyc03g005350.2.1	Tomato	nucleus	51.93	50.0
CDX97278	Canola	nucleus	52.28	49.83
CDY18143	Canola	nucleus	53.33	49.67
CDX89919	Canola	nucleus	53.33	48.87
Bra033368.1-P	Field mustard	nucleus	53.33	48.87
KRH34087	Soybean	nucleus	56.14	48.78
KRG92679	Soybean	nucleus	56.49	48.49
AT1G03040.3	Thale cress	nucleus	51.93	44.44
Zm00001d020490_P001	Maize	nucleus	42.46	35.17
Zm00001d018374_P001	Maize	nucleus	42.81	31.36
Zm00001d005750_P002	Maize	mitochondrion	44.91	31.3
Zm00001d052038_P001	Maize	nucleus	35.79	30.54
Zm00001d045107_P001	Maize	nucleus	33.68	28.92
Zm00001d000291_P001	Maize	nucleus	47.37	28.78
Zm00001d045046_P001	Maize	nucleus	36.84	21.83
Zm00001d016873_P001	Maize	nucleus	36.84	21.47
Zm00001d002288_P002	Maize	nucleus	15.44	20.56
Zm00001d026317_P003	Maize	nucleus, plastid	16.49	19.83
Zm00001d037098_P003	Maize	nucleus	35.79	19.58
Zm00001d045212_P001	Maize	nucleus	15.79	13.27
Zm00001d031044_P001	Maize	nucleus	17.89	12.78
Zm00001d018416_P001	Maize	mitochondrion	14.74	12.73
Zm00001d034298_P001	Maize	nucleus	18.25	12.32
Zm00001d013130_P001	Maize	nucleus	15.79	11.63
Zm00001d029898_P001	Maize	nucleus	16.84	9.8
Zm00001d024783_P001	Maize	nucleus	17.19	9.7
Zm00001d040536_P005	Maize	nucleus	19.3	9.7
Zm00001d033267_P001	Maize	nucleus	17.54	9.12
Zm00001d008205_P001	Maize	nucleus	18.6	8.31
Zm00001d029897_P001	Maize	nucleus	2.81	2.93

Protein Annotations

EntrezGene:100272246	MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:B4FMK3	EMBL:BT038341	EMBL:EU965846
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	ProteinID:ONM51745.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF103
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00017B6C3C	EnsemblPlantsGene:Zm00001d018967	EnsemblPlants:Zm00001d018967_P001	EnsemblPlants:Zm00001d018967_T001
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

bHLH-transcription factor 39Transcription factor bHLH7

Coordinates

chr7:-:10976782..10980428

Molecular Weight (calculated)

30134.0 Da

IEP (calculated)

6.683

GRAVY (calculated)

-0.396

Length

285 amino acids

Sequence
(BLAST)

001: MAGQPPPSGA SEDDFLEHFF AFPSAASAGA AGGHAGAGVG GDHPFPLALS LDAAAEAKPD RDPVQLAGLF PPVFAGAGGV HQPHLRGPPP PQMFQAQPKP
101: GEGGMAPQPP APRPKVRARR GQATDPHSIA ERLRRERIAE RMRALQELVP NTNKTDRAAM LDEILDYVKF LRLQVKVLSM SRLGGAGAVA QLVADIPLSV
201: KGEAGDGGGA PQQQQQQHVW EKWSTDGTEK QVAKLMEEDI GAAMQFLQSK ALCMMPVSLA MAIYDTQHPL DGHGHSLKPE PNASS

Best Arabidopsis Sequence Match ( AT4G02590.2 )
(BLAST)

001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ

Arabidopsis Description

UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.