Factsheet for TraesCS6D01G207100.2

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, nucleus

Predictor Summary:

endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus, plastid
Any Predictor:	endoplasmic reticulum, nucleus, plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G083000.1
TraesCS1A01G150600.1
TraesCS1B01G100400.2
TraesCS1B01G168200.1
TraesCS1D01G084200.1
TraesCS1D01G147600.1
TraesCS2A01G168800.1
TraesCS2B01G195100.1
TraesCS2D01G176400.1
TraesCS3A01G389600.1
TraesCS3A01G417300.1
TraesCS3A01G499100.1
TraesCS3B01G419200.1
TraesCS3B01G452200.1
TraesCS3B01G562300.3
TraesCS3D01G380100.1
TraesCS3D01G412800.1
TraesCS3D01G505900.1
TraesCS4A01G164000.1
TraesCS4B01G157500.1
TraesCS5A01G320300.1
TraesCS5B01G320500.1
TraesCS5D01G326200.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	TraesCS3A01G389600.1	AT1G33470.1	21798944
AT5G61380.1	TraesCS3A01G499100.1	AT1G33470.1	21798944
AT5G61380.1	TraesCS3B01G419200.1	AT1G33470.1	21798944
AT5G61380.1	TraesCS3B01G562300.3	AT1G33470.1	21798944
AT5G61380.1	TraesCS3D01G380100.1	AT1G33470.1	21798944
AT5G61380.1	TraesCS3D01G505900.1	AT1G33470.1	21798944
AT5G61380.1	TraesCS4A01G164000.1	AT1G68050.1	14654842
AT5G61380.1	TraesCS4B01G157500.1	AT1G68050.1	14654842
AT5G61380.1	TraesCS1A01G150600.1	AT2G33410.1	21798944
AT5G61380.1	TraesCS1B01G168200.1	AT2G33410.1	21798944
AT5G61380.1	TraesCS1D01G147600.1	AT2G33410.1	21798944
AT5G61380.1	TraesCS1A01G083000.1	AT2G46970.1	11828029
AT5G61380.1	TraesCS1B01G100400.2	AT2G46970.1	11828029
AT5G61380.1	TraesCS1D01G084200.1	AT2G46970.1	11828029
AT5G61380.1	TraesCS2A01G168800.1	AT3G16980.1	21798944
AT5G61380.1	TraesCS2B01G195100.1	AT3G16980.1	21798944
AT5G61380.1	TraesCS2D01G176400.1	AT3G16980.1	21798944
AT5G61380.1	TraesCS3A01G417300.1	AT3G24650.1	10743655
AT5G61380.1	TraesCS3B01G452200.1	AT3G24650.1	10743655
AT5G61380.1	TraesCS3D01G412800.1	AT3G24650.1	10743655
AT5G61380.1	TraesCS5A01G320300.1	AT5G24470.1	20407420
AT5G61380.1	TraesCS5B01G320500.1	AT5G24470.1	20407420
AT5G61380.1	TraesCS5D01G326200.3	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G253900.1	Wheat	nucleus	89.05	97.67
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	96.29	96.98
HORVU6Hr1G057630.1	Barley	nucleus	86.04	93.3
Os02t0618200-01	Rice	nucleus	70.14	76.64
EES05438	Sorghum	nucleus	70.49	76.14
Zm00001d017241_P002	Maize	nucleus	66.43	72.73
Zm00001d051114_P001	Maize	nucleus	66.43	68.86
Zm00001d003811_P001	Maize	cytosol	37.46	65.84
Zm00001d018818_P001	Maize	cytosol	35.16	65.46
Zm00001d043140_P001	Maize	cytosol	35.16	65.46
Zm00001d044406_P001	Maize	cytosol	34.45	64.14
GSMUA_Achr10P...	Banana	nucleus	44.7	46.68
VIT_17s0000g06520.t01	Wine grape	cytosol	13.07	46.54
GSMUA_Achr2P04570_001	Banana	nucleus	44.88	46.27
GSMUA_Achr9P19550_001	Banana	nucleus	41.87	44.97
KRH54582	Soybean	nucleus	42.4	43.01
KRH63298	Soybean	nucleus	42.4	42.86
Solyc06g069690.2.1	Tomato	nucleus	37.81	42.63
KRH56889	Soybean	nucleus	42.76	42.09
VIT_17s0000g06570.t01	Wine grape	nucleus	40.46	41.56
Zm00001d005366_P001	Maize	cytosol	39.58	41.33
Solyc03g115770.2.1	Tomato	nucleus	40.11	41.12
KRH03510	Soybean	nucleus	41.87	40.93
CDX87210	Canola	nucleus	36.22	40.92
PGSC0003DMT400050252	Potato	nucleus	39.75	40.83
PGSC0003DMT400083086	Potato	nucleus	39.58	40.8
Bra035933.1-P	Field mustard	nucleus	35.69	39.69
VIT_17s0000g06560.t01	Wine grape	plastid	9.54	38.85
CDY02151	Canola	nucleus	36.4	37.66
CDY64140	Canola	nucleus	36.75	36.3
Bra012964.1-P	Field mustard	nucleus	36.57	35.94
AT5G61380.1	Thale cress	nucleus	37.99	34.79
TraesCS2D01G079600.2	Wheat	nucleus	19.43	16.34
TraesCS4D01G112800.1	Wheat	nucleus	19.08	15.61
TraesCS5D01G326200.3	Wheat	nucleus	16.96	15.41
TraesCS4D01G199600.1	Wheat	nucleus	20.14	14.94

Protein Annotations

MapMan:27.1.3	InterPro:CCT_domain	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0007154	GO:GO:0007165	GO:GO:0007623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010031	GO:GO:0010468
GO:GO:0010629	InterPro:IPR001789	InterPro:IPR010402	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110
PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF1	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS6D01G207100	EnsemblPlants:TraesCS6D01G207100.2	TIGR:cd00156	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:+:292717859..292720084

Molecular Weight (calculated)

62788.2 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.454

Length

566 amino acids

Sequence
(BLAST)

001: MVGAGEGVRA GGSGAGVGAG AGAGQPFVDR SKVRILLCDS DPDSSQDVLR LLCNCSYQGQ FTLGLLLIMC LLLAVGLIIT STTSITIFSS NDVSGARCCC
101: FIFPVTCAKS PRQVINVLNC EGAEIDIILA EVDLPVSKCF KMLKYIGRNK ELRHIPIIMM SNRDEVSVVV KCLRLGAAEY LVKPLRMNEL LNLWTHVWRR
201: RRMLGLAEKN FFIDNLELVL SEPSDANTNS TTLLSDETDD KPKGNRNHET NTSSQHEYES PAVDPPKTDQ LENLPSIAED DDKASSPGGM FSRPIKTNLR
301: IAESSAFLAY VKSSTPANNP LDNELQREGN QIDVMDHQGN FSGATDRIDT NGKINIQDEK AFETPMQYPL VCFSSSNLHL EQRNEGQQDV SGNPPVYHYP
401: FYYPGMVEHG MTLHSVQSFQ GNINTAQAHT PPTMLHQYNV YHQSHGASMQ SYQYSPAGMN VHSSHLSTQN VWSSVSSTPI LEERHSRSGR RAAALAKFRQ
501: KRKDRCFDKK VRYVNRKKVA ETRPRVRGQF VRQASNTDII STGDDISEYE DDDPSSRDVE LVSSPE

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.