Factsheet for VIT_07s0005g05100.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g02510.t01
VIT_07s0005g05100.t01
VIT_12s0028g01110.t01
VIT_17s0000g06920.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20180.2	VIT_07s0005g05100.t01	AT2G20180.2	21928113
AT2G20180.2	VIT_12s0028g01110.t01	AT3G59060.2	21928113
AT2G20180.2	VIT_07s0005g02510.t01	AT3G62090.2	21928113
AT2G20180.2	VIT_17s0000g06920.t01	AT5G61270.1	21928113

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19683	Soybean	nucleus	54.11	49.12
Solyc09g063010.2.1	Tomato	nucleus	55.84	46.32
PGSC0003DMT400048756	Potato	nucleus	56.49	45.16
AT2G20180.2	Thale cress	nucleus	40.91	39.54
CDY31989	Canola	nucleus	39.18	38.03
CDY05725	Canola	nucleus	40.91	37.28
GSMUA_Achr1P16830_001	Banana	extracellular	20.13	36.19
VIT_07s0005g02510.t01	Wine grape	nucleus	11.04	25.5
VIT_12s0028g01110.t01	Wine grape	nucleus	29.65	24.55
VIT_17s0000g06930.t01	Wine grape	nucleus	18.83	20.57
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	16.23	19.04
VIT_14s0060g00260.t01	Wine grape	nucleus	28.79	18.76
VIT_15s0021g02690.t01	Wine grape	nucleus	18.61	18.49
VIT_18s0001g10270.t01	Wine grape	nucleus	14.72	18.43
VIT_07s0141g00220.t01	Wine grape	nucleus	9.74	15.57
VIT_05s0020g04620.t01	Wine grape	nucleus	9.74	14.38
VIT_14s0030g02230.t01	Wine grape	nucleus	10.17	14.2
VIT_11s0037g00040.t01	Wine grape	nucleus	14.5	13.29
VIT_11s0016g00380.t01	Wine grape	nucleus	12.55	10.82

Protein Annotations

EntrezGene:100264869	wikigene:100264869	MapMan:15.5.32	ProteinID:CCB60218	ProteinID:CCB60218.1	UniProt:F6HZV2
EMBL:FN596502	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100264869	wikigene:LOC100264869	PANTHER:PTHR12565	PANTHER:PTHR12565:SF194
SUPFAM:SSF47459	UniParc:UPI0002109474	ArrayExpress:VIT_07s0005g05100	EnsemblPlantsGene:VIT_07s0005g05100	EnsemblPlants:VIT_07s0005g05100.t01	RefSeq:XP_002263397
RefSeq:XP_002263397.2	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:9033545..9037968

Molecular Weight (calculated)

50015.8 Da

IEP (calculated)

5.315

GRAVY (calculated)

-0.705

Length

462 amino acids

Sequence
(BLAST)

001: MELLWQNGQV VMQIQNQRSF KKSQPSKFPI QDAVLPPEQS KIRSSAPVDE SSAQLFMQED EMASWLHYPL DDFCADLLDP TPCVNASPPP ARPNLSPDVR
101: QPEERPAATK PPIPPARRVE LDSKVHNFLH FPRKSTAESG EPSSSRPAGM ESTVVDSSDT PGVCQQSRTS PAEWCKAELA NSGYGTIGGA TEAATSAAGE
201: HTTFELTMTS SPEGSGSGGS ASAGAEPTPK APADDRKRKG REGDDTAEYQ SEDVEFESAD AKKQVRGSAT AKRSRAAEVH NLSERSDKAS MLDEAIEYLK
301: SLQLQVQMMS MGCSMVPMMY PGVQQYMPQM GMGMGMGMGM EMGMNRPMMP FPSVLGGSTL PTTAAAAHLG QRYPMPAFHM PHMAAPDSSR IQANNQSDPV
401: LNSLGTQSSN QPRVPNFADP YLQYLQQMQM PPAQNQAMGQ QNTSKPSTSK GTENLENHRS GR

Best Arabidopsis Sequence Match ( AT2G20180.4 )
(BLAST)

001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG

Arabidopsis Description

PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.