Factsheet for VIT_11s0037g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020244	Potato	nucleus	53.37	70.42
Solyc12g010170.1.1	Tomato	nucleus	52.78	68.73
KRH12909	Soybean	nucleus	62.3	66.11
KRH37912	Soybean	nucleus	63.69	65.51
PGSC0003DMT400028917	Potato	nucleus	56.94	64.64
Solyc07g005400.2.1	Tomato	nucleus	55.75	63.86
GSMUA_Achr4P01910_001	Banana	nucleus	47.42	53.23
GSMUA_Achr3P04630_001	Banana	nucleus	49.01	50.61
VIT_07s0141g00220.t01	Wine grape	nucleus	27.78	48.44
VIT_05s0020g04620.t01	Wine grape	nucleus	29.37	47.28
VIT_14s0030g02230.t01	Wine grape	nucleus	29.76	45.32
VIT_11s0016g00380.t01	Wine grape	nucleus	27.18	25.56
VIT_07s0005g02510.t01	Wine grape	nucleus	9.72	24.5
VIT_18s0001g10270.t01	Wine grape	nucleus	12.7	17.34
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	13.49	17.26
VIT_15s0021g02690.t01	Wine grape	nucleus	13.49	14.62
VIT_07s0005g05100.t01	Wine grape	mitochondrion, nucleus	13.29	14.5
VIT_12s0028g01110.t01	Wine grape	nucleus	15.48	13.98
VIT_17s0000g06930.t01	Wine grape	nucleus	11.71	13.95
VIT_14s0060g00260.t01	Wine grape	nucleus	15.87	11.28

Protein Annotations

EntrezGene:100243222	wikigene:100243222	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CCB59747	ProteinID:CCB59747.1
UniProt:F6HYI3	EMBL:FN596499	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EntrezGene:LOC100243222	wikigene:LOC100243222	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223
PANTHER:PTHR16223:SF28	SMART:SM00353	SUPFAM:SSF47459	TIGR:TC67068	TIGR:TC68964	UniParc:UPI000210A505
ArrayExpress:VIT_11s0037g00040	EnsemblPlantsGene:VIT_11s0037g00040	EnsemblPlants:VIT_11s0037g00040.t01	RefSeq:XP_002276403	RefSeq:XP_002276403.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:7656325..7659699

Molecular Weight (calculated)

53067.9 Da

IEP (calculated)

6.827

GRAVY (calculated)

-0.524

Length

504 amino acids

Sequence
(BLAST)

001: MQAINSLLNP SQISLQDLQN GHHHHHHHQH QQQQQHQHHP QIPNPSQIQL PNTHFDSSSH DDFLEQMLST LPSWSDLPAN PKSPWELNAS NPISMPSNKS
101: RDLSDDTTPS NPDNVQFAFD ESAMLASKLR QHQISGNSSA AKSALMLQQQ LLLSRGVAMG RSPSNGSGAG ESGLLQLPLS LSNGDSCLVD RSQNDVVDGS
201: SSFKSPNQGG DGSVQALYNG FAGALHGSGQ ASNQAQNFHH PQGGSMQAQN YGAPATVMNQ TPATGSAGGA PAQPRQRVRA RRGQATDPHS IAERLRRERI
301: AERMKALQEL VPNANKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVADMSS EGGGDCIQAS GTSGPTGGRA TNGTQTTTSN DSLTVTEHQV
401: AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTTTCHSRN PMVAAAAVAA SNINNGSHTH PLLPNSNADG PSSPSMSVLT VQSATMGNGL ADAPVKDAAS
501: VSKP

Best Arabidopsis Sequence Match ( AT2G24260.1 )
(BLAST)

001: MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.