Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G223700.1 | nucleus |
| TraesCS6B01G257600.2 | nucleus |
| TraesCS6D01G211700.1 | nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34530.1 | TraesCS6A01G223700.1 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | TraesCS6B01G257600.2 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | TraesCS6D01G211700.1 | AT1G04400.1 | 22739826 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G300400.1 | Wheat | nucleus | 91.41 | 94.02 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 90.86 | 92.66 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 87.26 | 81.61 |
| EES05656 | Sorghum | nucleus | 63.71 | 64.07 |
| Zm00001d051569_P001 | Maize | nucleus | 60.11 | 63.45 |
| Os02t0705500-01 | Rice | nucleus | 61.77 | 61.77 |
| Zm00001d017778_P001 | Maize | nucleus | 63.71 | 59.9 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 34.9 | 39.87 |
| GSMUA_Achr10P... | Banana | nucleus | 39.06 | 35.07 |
| CDX76288 | Canola | nucleus | 24.1 | 34.8 |
| PGSC0003DMT400040021 | Potato | nucleus | 28.81 | 34.32 |
| Solyc02g062690.2.1 | Tomato | mitochondrion, nucleus | 28.53 | 33.77 |
| Solyc03g034000.2.1 | Tomato | nucleus | 24.38 | 33.08 |
| PGSC0003DMT400058169 | Potato | nucleus | 24.38 | 32.84 |
| Bra034636.1-P | Field mustard | nucleus | 25.48 | 32.74 |
| TraesCS7A01G403900.1 | Wheat | cytosol | 13.85 | 32.47 |
| CDY17466 | Canola | nucleus | 24.38 | 31.65 |
| Bra011540.1-P | Field mustard | nucleus | 28.53 | 31.4 |
| CDX75440 | Canola | nucleus | 28.25 | 31.0 |
| TraesCS5A01G292900.1 | Wheat | nucleus | 23.82 | 30.61 |
| AT4G34530.1 | Thale cress | nucleus | 27.42 | 29.55 |
| CDX69067 | Canola | nucleus | 27.42 | 29.12 |
| TraesCS7A01G263700.1 | Wheat | nucleus | 24.93 | 29.03 |
| KRH51523 | Soybean | nucleus | 29.92 | 27.69 |
| TraesCS4A01G255800.3 | Wheat | nucleus | 24.38 | 27.08 |
| KRH29448 | Soybean | nucleus | 31.3 | 26.84 |
| KRH24463 | Soybean | nucleus | 29.92 | 26.73 |
| TraesCS5A01G279200.2 | Wheat | nucleus | 27.15 | 25.39 |
| KRH60839 | Soybean | nucleus | 30.19 | 25.35 |
| TraesCS7A01G256200.3 | Wheat | nucleus | 27.7 | 25.19 |
| VIT_04s0023g01930.t01 | Wine grape | nucleus | 25.21 | 24.86 |
| Solyc01g109700.2.1 | Tomato | nucleus | 29.64 | 24.65 |
| PGSC0003DMT400001888 | Potato | nucleus | 29.92 | 24.43 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 30.47 | 24.28 |
| TraesCS3A01G421400.1 | Wheat | nucleus | 28.81 | 23.8 |
| TraesCS5A01G250600.1 | Wheat | nucleus | 26.87 | 22.82 |
| TraesCS2A01G275600.1 | Wheat | nucleus | 24.93 | 22.17 |
| TraesCS7A01G211900.1 | Wheat | nucleus | 25.48 | 20.91 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G273000.2 | EnsemblPlantsGene:TraesCS6A01G273000 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF182 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | : | : | : |
Description
No Description!
Coordinates
chr6A:-:499405767..499407713
Molecular Weight (calculated)
38050.8 Da
IEP (calculated)
6.744
GRAVY (calculated)
-0.373
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHCGGGQAA SVESHFQGLL DDDDKYRALC GAFGYLQQQE WPDLSGACYS AFGAPPPPGA ATQATSNGAG NSFTCSGSAS SGGGSAKRKP DAYVDAKLCQ
101: DDCKRPRGKQ QLCDPGEAGG AAKGRPEKPK ACARKKPEPA AAGQKTDYIH VRARRGQATD SHSLAERVRR ERISERMRYL QELVPGCDKV TGKAGMLDEI
201: INYVQSLQKQ VEFLSMKIAA SNPVVNFNIV DDLFGGRRMN QACGPAAALP AMTLPMHQGQ LDPSCLQMSS ATMQQMQQPA AGFGLDMLVS SSYPAAQSAP
301: PSAAATPVSM SASATASVDS CLDVNGAAAW DIASQHLFSG FDAQFQSVQS DCLLDNLKME L
101: DDCKRPRGKQ QLCDPGEAGG AAKGRPEKPK ACARKKPEPA AAGQKTDYIH VRARRGQATD SHSLAERVRR ERISERMRYL QELVPGCDKV TGKAGMLDEI
201: INYVQSLQKQ VEFLSMKIAA SNPVVNFNIV DDLFGGRRMN QACGPAAALP AMTLPMHQGQ LDPSCLQMSS ATMQQMQQPA AGFGLDMLVS SSYPAAQSAP
301: PSAAATPVSM SASATASVDS CLDVNGAAAW DIASQHLFSG FDAQFQSVQS DCLLDNLKME L
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.