Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011540.1-P | Field mustard | nucleus | 69.25 | 70.73 |
| CDX75440 | Canola | nucleus | 68.96 | 70.21 |
| CDX69067 | Canola | nucleus | 67.46 | 66.47 |
| CDY17466 | Canola | nucleus | 54.63 | 65.83 |
| CDX76288 | Canola | nucleus | 48.06 | 64.4 |
| Bra034636.1-P | Field mustard | nucleus | 53.73 | 64.06 |
| KRH51523 | Soybean | nucleus | 36.12 | 31.03 |
| AT5G50915.2 | Thale cress | nucleus | 25.97 | 30.42 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 28.06 | 29.75 |
| AT5G62610.2 | Thale cress | nucleus | 24.78 | 29.54 |
| KRH24463 | Soybean | nucleus | 35.22 | 29.21 |
| TraesCS6B01G300400.1 | Wheat | nucleus | 30.45 | 29.06 |
| Zm00001d051569_P001 | Maize | nucleus | 29.55 | 28.95 |
| EES05656 | Sorghum | nucleus | 30.75 | 28.69 |
| KRH29448 | Soybean | nucleus | 35.82 | 28.5 |
| KRH60839 | Soybean | nucleus | 36.12 | 28.14 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 29.55 | 27.97 |
| AT2G42300.1 | Thale cress | nucleus | 26.87 | 27.52 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 29.55 | 27.42 |
| Os02t0705500-01 | Rice | nucleus | 29.55 | 27.42 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 37.01 | 27.37 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 30.75 | 26.68 |
| Zm00001d017778_P001 | Maize | nucleus | 30.15 | 26.3 |
| PGSC0003DMT400001888 | Potato | nucleus | 34.63 | 26.24 |
| AT1G26260.1 | Thale cress | nucleus | 30.45 | 26.15 |
| AT1G10120.1 | Thale cress | nucleus | 28.36 | 25.96 |
| AT3G23690.1 | Thale cress | nucleus | 28.66 | 25.88 |
| Solyc01g109700.2.1 | Tomato | nucleus | 33.43 | 25.81 |
| GSMUA_Achr10P... | Banana | nucleus | 30.45 | 25.37 |
| AT1G59640.2 | Thale cress | nucleus | 24.18 | 23.62 |
| AT3G57800.1 | Thale cress | nucleus | 28.66 | 22.54 |
| AT3G07340.1 | Thale cress | nucleus | 29.55 | 21.71 |
| AT1G68920.1 | Thale cress | nucleus | 31.04 | 21.4 |
| AT5G48560.1 | Thale cress | nucleus | 31.04 | 20.88 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | EntrezGene:829604 | UniProt:A0A178V495 | ProteinID:AEE86389.1 |
| EMBL:AF488596 | EMBL:AK117846 | ArrayExpress:AT4G34530 | EnsemblPlantsGene:AT4G34530 | RefSeq:AT4G34530 | TAIR:AT4G34530 |
| RefSeq:AT4G34530-TAIR-G | EnsemblPlants:AT4G34530.1 | TAIR:AT4G34530.1 | EMBL:AY120741 | EMBL:BT005313 | ProteinID:CAA18832.1 |
| ProteinID:CAB80170.1 | Symbol:CIB1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009911 | GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| RefSeq:NP_195179.2 | ProteinID:OAP00696.1 | PFAM:PF00010 | PO:PO:0005020 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF184 | UniProt:Q8GY61 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000000C5E4 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
Coordinates
chr4:+:16498391..16500174
Molecular Weight (calculated)
37542.5 Da
IEP (calculated)
5.680
GRAVY (calculated)
-0.652
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.