Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72360 | Canola | cytosol | 36.39 | 90.0 |
| Bra028335.1-P | Field mustard | nucleus | 78.44 | 87.65 |
| CDY56230 | Canola | nucleus | 76.28 | 84.98 |
| CDY18099 | Canola | nucleus | 50.67 | 84.3 |
| CDX85122 | Canola | nucleus | 73.85 | 82.78 |
| CDX77488 | Canola | nucleus | 73.32 | 82.67 |
| Bra014972.1-P | Field mustard | nucleus | 73.32 | 82.67 |
| CDY25986 | Canola | plastid | 23.99 | 40.83 |
| CDY33821 | Canola | mitochondrion, plastid | 20.75 | 39.29 |
| AT5G62610.2 | Thale cress | nucleus | 26.42 | 34.88 |
| AT5G50915.2 | Thale cress | nucleus | 26.15 | 33.92 |
| Solyc09g097870.2.1 | Tomato | nucleus | 37.2 | 32.02 |
| PGSC0003DMT400042791 | Potato | nucleus | 37.2 | 31.44 |
| PGSC0003DMT400011651 | Potato | nucleus | 33.96 | 30.51 |
| Solyc12g098620.1.1 | Tomato | nucleus | 33.15 | 30.45 |
| CDY61581 | Canola | plastid | 14.56 | 29.51 |
| AT1G10120.1 | Thale cress | nucleus | 29.11 | 29.51 |
| AT2G42300.1 | Thale cress | nucleus | 25.34 | 28.75 |
| AT4G34530.1 | Thale cress | nucleus | 25.88 | 28.66 |
| AT5G48560.1 | Thale cress | nucleus | 35.31 | 26.31 |
| AT1G26260.1 | Thale cress | nucleus | 27.49 | 26.15 |
| AT1G59640.2 | Thale cress | nucleus | 23.99 | 25.95 |
| AT3G07340.1 | Thale cress | nucleus | 31.27 | 25.44 |
| AT1G68920.1 | Thale cress | nucleus | 30.73 | 23.46 |
| VIT_05s0029g00390.t01 | Wine grape | nucleus | 33.69 | 22.98 |
| AT3G57800.1 | Thale cress | nucleus | 25.88 | 22.54 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | EntrezGene:821950 | UniProt:A0A178VLY6 | ProteinID:ACB30978.1 |
| ProteinID:ACB30979.1 | ProteinID:ACB30980.1 | ProteinID:ACB30981.1 | ProteinID:ACB30982.1 | ProteinID:ACB30983.1 | ProteinID:ACB30984.1 |
| ProteinID:ACB30985.1 | ProteinID:ACB30986.1 | ProteinID:ACB30987.1 | ProteinID:ACB30988.1 | ProteinID:ACB30989.1 | ProteinID:ACB30990.1 |
| ProteinID:ACB30991.1 | ProteinID:ACB30992.1 | ProteinID:ACB30993.1 | ProteinID:ACB30994.1 | ProteinID:ACB30995.1 | ProteinID:ACB30996.1 |
| ProteinID:ACB30997.1 | ProteinID:ACB30998.1 | ProteinID:ACB30999.1 | ProteinID:ACB31000.1 | ProteinID:ACB31001.1 | ProteinID:AEE76802.1 |
| EMBL:AF488609 | ArrayExpress:AT3G23690 | EnsemblPlantsGene:AT3G23690 | RefSeq:AT3G23690 | TAIR:AT3G23690 | RefSeq:AT3G23690-TAIR-G |
| EnsemblPlants:AT3G23690.1 | TAIR:AT3G23690.1 | EMBL:AY065441 | EMBL:AY096536 | ProteinID:BAB01846.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0044212 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_189011.2 | ProteinID:OAP06906.1 | PFAM:PF00010 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | UniProt:Q9LK48 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI00000A3FD3 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
BHLH77Transcription factor bHLH77 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK48]
Coordinates
chr3:-:8528609..8531358
Molecular Weight (calculated)
40759.3 Da
IEP (calculated)
5.816
GRAVY (calculated)
-0.847
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MNMDKETEQT LNYLPLGQSD PFGNGNEGTI GDFLGRYCNN PQEISPLTLQ SFSLNSQISE NFPISGGIRF PPYPGQFGSD REFGSQPTTQ ESNKSSLLDP
101: DSVSDRVHTT KSNSRKRKSI PSGNGKESPA SSSLTASNSK VSGENGGSKG GKRSKQDVAG SSKNGVEKCD SKGDNKDDAK PPEAPKDYIH VRARRGQATD
201: SHSLAERARR EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMEFNAN ASLSTEMIQP GESLTQSLYA MACSEQRLPS
301: AYYSLGKNMP RFSDTQFPSN DGFVHTETPG FWENNDLQSI VQMGFGDILQ QQSNNNNNNC SEPTLQMKLE P
101: DSVSDRVHTT KSNSRKRKSI PSGNGKESPA SSSLTASNSK VSGENGGSKG GKRSKQDVAG SSKNGVEKCD SKGDNKDDAK PPEAPKDYIH VRARRGQATD
201: SHSLAERARR EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMEFNAN ASLSTEMIQP GESLTQSLYA MACSEQRLPS
301: AYYSLGKNMP RFSDTQFPSN DGFVHTETPG FWENNDLQSI VQMGFGDILQ QQSNNNNNNC SEPTLQMKLE P
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.