Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004679.1-P | Field mustard | nucleus | 69.42 | 75.17 |
| CDY53497 | Canola | nucleus | 69.72 | 73.79 |
| CDX79883 | Canola | nucleus | 67.89 | 73.51 |
| AT3G57800.1 | Thale cress | nucleus | 77.98 | 59.86 |
| VIT_08s0007g07870.t01 | Wine grape | nucleus | 56.88 | 51.1 |
| KRG95332 | Soybean | nucleus | 55.35 | 49.45 |
| KRH71879 | Soybean | nucleus | 53.21 | 49.15 |
| KRH33022 | Soybean | nucleus | 52.29 | 47.9 |
| PGSC0003DMT400021130 | Potato | nucleus | 51.07 | 46.39 |
| Solyc10g079070.1.1 | Tomato | nucleus | 50.15 | 45.43 |
| KRH67006 | Soybean | nucleus | 54.43 | 44.5 |
| TraesCS7B01G303300.1 | Wheat | nucleus | 39.76 | 41.4 |
| TraesCS7D01G397300.1 | Wheat | nucleus, plastid | 39.76 | 41.14 |
| GSMUA_Achr4P19330_001 | Banana | nucleus | 48.32 | 40.83 |
| GSMUA_Achr1P19610_001 | Banana | nucleus | 45.57 | 40.82 |
| GSMUA_Achr7P06330_001 | Banana | nucleus | 43.73 | 39.07 |
| HORVU7Hr1G094690.1 | Barley | plastid | 28.75 | 38.06 |
| GSMUA_Achr9P22300_001 | Banana | nucleus | 33.64 | 37.93 |
| TraesCS7A01G403900.1 | Wheat | cytosol | 17.74 | 37.66 |
| Zm00001d046759_P001 | Maize | plastid | 37.92 | 34.83 |
| Zm00001d036807_P001 | Maize | nucleus | 38.23 | 33.78 |
| OQU76702 | Sorghum | nucleus | 39.45 | 31.46 |
| AT5G62610.2 | Thale cress | nucleus | 23.24 | 27.05 |
| AT4G34530.1 | Thale cress | nucleus | 27.52 | 26.87 |
| AT5G50915.2 | Thale cress | nucleus | 22.32 | 25.52 |
| AT3G23690.1 | Thale cress | nucleus | 28.75 | 25.34 |
| AT1G26260.1 | Thale cress | nucleus | 29.97 | 25.13 |
| AT1G10120.1 | Thale cress | nucleus | 27.22 | 24.32 |
| AT1G59640.2 | Thale cress | nucleus | 23.55 | 22.45 |
| AT1G68920.1 | Thale cress | nucleus | 32.11 | 21.6 |
| AT3G07340.1 | Thale cress | nucleus | 29.66 | 21.27 |
| AT5G48560.1 | Thale cress | nucleus | 30.58 | 20.08 |
| Os09t0474051-01 | Rice | plastid | 14.98 | 8.38 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | EntrezGene:818831 | ProteinID:AAD23713.1 | ProteinID:AEC10102.1 |
| EMBL:AF488583 | EMBL:AK175584 | EMBL:AK176019 | EMBL:AK176634 | ArrayExpress:AT2G42300 | EnsemblPlantsGene:AT2G42300 |
| RefSeq:AT2G42300 | TAIR:AT2G42300 | RefSeq:AT2G42300-TAIR-G | EnsemblPlants:AT2G42300.1 | TAIR:AT2G42300.1 | EMBL:AY065411 |
| EMBL:AY096521 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_850368.1 |
| PFAM:PF00010 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF112 | UniProt:Q8VZ02 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00000A396F | InterPro:bHLH_dom | SEG:seg | : |
Description
BHLH48Transcription factor bHLH48 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ02]
Coordinates
chr2:+:17620895..17624852
Molecular Weight (calculated)
36194.5 Da
IEP (calculated)
6.443
GRAVY (calculated)
-0.594
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLTQGFRAR SGVVGPVAGL ESLNFSDEFR HLVTTMPPET TGGSFTALLE MPVTQAMELL HFPDSSSSQA RTVTSGDISP TTLHPFGALT FPSNSLLLDR
101: AARFSVIATE QNGNFSGETA NSLPSNPGAN LDRVKAEPAE TDSMVENQNQ SYSSGKRKER EKKVKSSTKK NKSSVESDKL PYVHVRARRG QATDNHSLAE
201: RARREKINAR MKLLQELVPG CDKIQGTALV LDEIINHVQT LQRQVEMLSM RLAAVNPRID FNLDSILASE NGSLMDGSFN AESYHQLQQW PFDGYHQPEW
301: GREEDHHQAN FSMGSATLHP NQVKMEL
101: AARFSVIATE QNGNFSGETA NSLPSNPGAN LDRVKAEPAE TDSMVENQNQ SYSSGKRKER EKKVKSSTKK NKSSVESDKL PYVHVRARRG QATDNHSLAE
201: RARREKINAR MKLLQELVPG CDKIQGTALV LDEIINHVQT LQRQVEMLSM RLAAVNPRID FNLDSILASE NGSLMDGSFN AESYHQLQQW PFDGYHQPEW
301: GREEDHHQAN FSMGSATLHP NQVKMEL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.