Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79883 | Canola | nucleus | 88.35 | 90.4 |
| AT2G42300.1 | Thale cress | nucleus | 73.79 | 69.72 |
| CDX88966 | Canola | nucleus | 66.34 | 61.75 |
| CDX67710 | Canola | nucleus | 64.08 | 61.49 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 27.18 | 60.87 |
| CDX98249 | Canola | nucleus | 54.05 | 59.64 |
| CDX71994 | Canola | nucleus | 67.96 | 58.17 |
| CDY06074 | Canola | nucleus | 65.7 | 57.02 |
| CDY47665 | Canola | cytosol | 42.39 | 50.97 |
| VIT_08s0007g07870.t01 | Wine grape | nucleus | 56.96 | 48.35 |
| KRG95332 | Soybean | nucleus | 55.02 | 46.45 |
| KRH71879 | Soybean | nucleus | 52.43 | 45.76 |
| KRH33022 | Soybean | nucleus | 51.13 | 44.26 |
| PGSC0003DMT400021130 | Potato | nucleus | 50.81 | 43.61 |
| Solyc10g079070.1.1 | Tomato | nucleus | 49.84 | 42.66 |
| KRH67006 | Soybean | nucleus | 53.4 | 41.25 |
| GSMUA_Achr1P19610_001 | Banana | nucleus | 45.95 | 38.9 |
| GSMUA_Achr4P19330_001 | Banana | nucleus | 47.9 | 38.24 |
| TraesCS7B01G303300.1 | Wheat | nucleus | 38.84 | 38.22 |
| TraesCS7D01G397300.1 | Wheat | nucleus, plastid | 38.84 | 37.97 |
| TraesCS7A01G403900.1 | Wheat | cytosol | 18.77 | 37.66 |
| HORVU7Hr1G094690.1 | Barley | plastid | 29.77 | 37.25 |
| GSMUA_Achr7P06330_001 | Banana | nucleus | 43.04 | 36.34 |
| GSMUA_Achr9P22300_001 | Banana | nucleus | 32.04 | 34.14 |
| Zm00001d046759_P001 | Maize | plastid | 37.54 | 32.58 |
| Zm00001d036807_P001 | Maize | nucleus | 37.86 | 31.62 |
| CDX76288 | Canola | nucleus | 25.24 | 31.2 |
| OQU76702 | Sorghum | nucleus | 39.16 | 29.51 |
| CDY17466 | Canola | nucleus | 26.54 | 29.5 |
| CDY08308 | Canola | nucleus | 27.18 | 28.77 |
| CDY72360 | Canola | cytosol | 13.92 | 28.67 |
| CDX75440 | Canola | nucleus | 30.1 | 28.27 |
| CDY18099 | Canola | nucleus | 20.06 | 27.8 |
| CDY25986 | Canola | plastid | 19.42 | 27.52 |
| CDY05670 | Canola | nucleus | 22.98 | 27.52 |
| CDY64034 | Canola | nucleus | 27.18 | 27.36 |
| CDX69067 | Canola | nucleus | 30.1 | 27.35 |
| CDY45806 | Canola | nucleus | 25.57 | 26.96 |
| CDX86296 | Canola | nucleus | 23.62 | 26.94 |
| CDX93427 | Canola | nucleus | 23.3 | 26.87 |
| CDY37979 | Canola | nucleus | 22.98 | 26.69 |
| CDX84885 | Canola | nucleus | 25.24 | 26.26 |
| CDX87255 | Canola | nucleus, plastid | 23.3 | 25.71 |
| CDX77488 | Canola | nucleus | 26.21 | 24.62 |
| CDY31048 | Canola | nucleus | 24.92 | 24.52 |
| CDY20659 | Canola | nucleus | 25.89 | 24.02 |
| CDY33821 | Canola | mitochondrion, plastid | 15.21 | 23.98 |
| CDX85122 | Canola | nucleus | 25.57 | 23.87 |
| CDY56230 | Canola | nucleus | 25.57 | 23.72 |
| CDY63738 | Canola | nucleus | 24.92 | 22.51 |
| CDY22605 | Canola | nucleus | 25.24 | 22.1 |
| CDY53834 | Canola | nucleus | 24.6 | 21.9 |
| CDY51061 | Canola | nucleus | 28.8 | 20.55 |
| CDY45835 | Canola | nucleus | 29.77 | 20.31 |
| CDY61581 | Canola | plastid | 11.97 | 20.22 |
| CDX81575 | Canola | nucleus | 30.74 | 20.0 |
| CDY28061 | Canola | nucleus | 29.13 | 19.87 |
| CDY61420 | Canola | extracellular | 8.74 | 19.85 |
| CDX95974 | Canola | nucleus | 30.74 | 19.83 |
| CDY33568 | Canola | nucleus | 30.74 | 19.71 |
| CDY35923 | Canola | nucleus, plastid | 28.48 | 19.64 |
| CDY57925 | Canola | nucleus | 24.6 | 19.1 |
| CDX86297 | Canola | nucleus | 30.1 | 18.98 |
| CDX85347 | Canola | nucleus | 30.1 | 18.94 |
| Os09t0474051-01 | Rice | plastid | 15.86 | 8.38 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078IU23 | UniProt:A0A078IU23 | EnsemblPlants:CDY53497 |
| ProteinID:CDY53497 | ProteinID:CDY53497.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00010830001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF112 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EF3976 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g02590DBnaC04g02590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IU23]
Coordinates
chrLK033208:-:27583..30793
Molecular Weight (calculated)
34243.3 Da
IEP (calculated)
6.750
GRAVY (calculated)
-0.678
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGVSSGAGP YRESPMTGLE SINFSDEIQQ LAATLPPENT GSFTALLEMP ATQAVELFTS SSQAAGNIAP PTLHPFRRLN LPPDLSVIAA EQNGNFSGES
101: VAPSSFSGRV KPEPDETDSS QRFVSHPTVE NQNRNKRKER GKKKVKSSMK KTKSSEEEAE KLPYVHVRAR RGQATDNHSL AERARREKIN ARMKLLQELV
201: PGCDKIQGTA LVLDEIINHV QSLQHQVEML SMRLAAVNPR TDFNLDSILA SQNGSLMDGS FNGESYHQLQ QWSLDGYHQP AWGREEDHHE GNFLMGSATL
301: HPNRVKMEL
101: VAPSSFSGRV KPEPDETDSS QRFVSHPTVE NQNRNKRKER GKKKVKSSMK KTKSSEEEAE KLPYVHVRAR RGQATDNHSL AERARREKIN ARMKLLQELV
201: PGCDKIQGTA LVLDEIINHV QSLQHQVEML SMRLAAVNPR TDFNLDSILA SQNGSLMDGS FNGESYHQLQ QWSLDGYHQP AWGREEDHHE GNFLMGSATL
301: HPNRVKMEL
001: MDLTQGFRAR SGVVGPVAGL ESLNFSDEFR HLVTTMPPET TGGSFTALLE MPVTQAMELL HFPDSSSSQA RTVTSGDISP TTLHPFGALT FPSNSLLLDR
101: AARFSVIATE QNGNFSGETA NSLPSNPGAN LDRVKAEPAE TDSMVENQNQ SYSSGKRKER EKKVKSSTKK NKSSVESDKL PYVHVRARRG QATDNHSLAE
201: RARREKINAR MKLLQELVPG CDKIQGTALV LDEIINHVQT LQRQVEMLSM RLAAVNPRID FNLDSILASE NGSLMDGSFN AESYHQLQQW PFDGYHQPEW
301: GREEDHHQAN FSMGSATLHP NQVKMEL
101: AARFSVIATE QNGNFSGETA NSLPSNPGAN LDRVKAEPAE TDSMVENQNQ SYSSGKRKER EKKVKSSTKK NKSSVESDKL PYVHVRARRG QATDNHSLAE
201: RARREKINAR MKLLQELVPG CDKIQGTALV LDEIINHVQT LQRQVEMLSM RLAAVNPRID FNLDSILASE NGSLMDGSFN AESYHQLQQW PFDGYHQPEW
301: GREEDHHQAN FSMGSATLHP NQVKMEL
Arabidopsis Description
BHLH48Transcription factor bHLH48 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ02]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.