CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029640.1-P	Field mustard	nucleus, plastid	94.04	95.95
CDY35923	Canola	nucleus, plastid	92.05	93.08
AT3G07340.1	Thale cress	nucleus	72.63	72.15
CDY05670	Canola	nucleus	34.0	59.69
CDY51061	Canola	nucleus	56.07	58.66
CDX85347	Canola	nucleus	59.6	54.99
CDX86296	Canola	nucleus	32.89	54.98
CDX86297	Canola	nucleus	59.38	54.9
CDY72360	Canola	cytosol	13.91	42.0
KRG99606	Soybean	nucleus	50.33	39.31
CDY25986	Canola	plastid	18.32	38.07
KRH46615	Soybean	nucleus	49.23	38.05
KRH07417	Soybean	nucleus, plastid	49.23	37.86
KRH66158	Soybean	nucleus, plastid	49.45	37.71
CDY45806	Canola	nucleus	23.62	36.52
CDY37979	Canola	nucleus	21.19	36.09
CDX84885	Canola	nucleus	23.62	36.03
CDY08308	Canola	nucleus	23.18	35.96
CDY18099	Canola	nucleus	17.66	35.87
CDY64034	Canola	nucleus	24.28	35.83
CDX93427	Canola	nucleus	21.19	35.82
CDX85122	Canola	nucleus	25.17	34.44
CDX77488	Canola	nucleus	24.94	34.35
CDX98249	Canola	nucleus	21.19	34.29
CDX76288	Canola	nucleus	18.54	33.6
CDX87255	Canola	nucleus, plastid	20.75	33.57
CDY56230	Canola	nucleus	24.28	33.03
CDY31048	Canola	nucleus	22.74	32.8
CDY33821	Canola	mitochondrion, plastid	14.13	32.65
CDX88966	Canola	nucleus	23.84	32.53
CDX67710	Canola	nucleus	22.74	31.99
CDY17466	Canola	nucleus	19.21	31.3
CDY47666	Canola	endoplasmic reticulum, extracellular	9.49	31.16
CDX79883	Canola	nucleus	20.75	31.13
CDY20659	Canola	nucleus	22.74	30.93
CDY61420	Canola	extracellular	9.27	30.88
CDY06074	Canola	nucleus	24.06	30.62
CDX71994	Canola	nucleus	24.28	30.47
CDY61581	Canola	plastid	12.14	30.05
CDY63738	Canola	nucleus	22.52	29.82
CDX75440	Canola	nucleus	21.41	29.48
CDY53834	Canola	nucleus	22.52	29.39
CDY53497	Canola	nucleus	19.87	29.13
CDY22605	Canola	nucleus	22.52	28.9
CDX69067	Canola	nucleus	21.41	28.53
CDY47665	Canola	cytosol	16.11	28.4
CDY45835	Canola	nucleus	26.93	26.93
CDY57925	Canola	nucleus	22.96	26.13
CDX81575	Canola	nucleus	26.93	25.68
CDY33568	Canola	nucleus	26.49	24.9
CDX95974	Canola	nucleus	26.27	24.84

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:A0A078GRM2	UniProt:A0A078GRM2	EnsemblPlants:CDY28061
ProteinID:CDY28061	ProteinID:CDY28061.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00039003001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EDE6B9
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BnaC05g44630DBnaC05g44630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRM2]

Coordinates

chrLK032213:+:436466..438993

Molecular Weight (calculated)

49495.6 Da

IEP (calculated)

6.459

GRAVY (calculated)

-0.647

Length

453 amino acids

Sequence
(BLAST)

001: MDNELFMNAG VLSHPSEMTS LSSSSPPAML NWASMETHLL EQSITHNVPR DCFFGEKSTE QSIFGSALNS LVSPPPSESN FSGGGAGENY VIRELVGNLG
101: NIGDIYGAPA SFGNGSGSCY AAPMMSSPPL DAFSGDSRFA ERAARFSCLG SRSFNGRRTN GPVAETASIN GEMTRVSSNS ALKPPAGESS GESSRKRKAK
201: SKEHSPSTAS PSPNLSKEVE GKEDSDSKRS RKSQENGENT KSLDPYKDFI HVRARRGQAT DSHSLAERVR REKISERMKL LQELVPGCNK VTGKALMLDE
301: IINYVQSLQR QVEFLSMKLS SVNTRLDFNM DALMSKDIFP SSNNQQVPQL ESSSHILLAD HHSHTLQLNP NDSSNNIMNP METSESRSFN SQLPTLTHLT
401: DSISQFSTYS EDDLHSIIHM GFAQNQIREP NQVHSTSFQG PSNQVPSHMK AEL

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.