CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07417	Soybean	nucleus, plastid	91.92	92.7
KRG99606	Soybean	nucleus	71.21	72.93
KRH46615	Soybean	nucleus	71.04	72.01
AT3G07340.1	Thale cress	nucleus	39.23	51.1
Bra029640.1-P	Field mustard	nucleus, plastid	37.71	50.45
CDY05670	Canola	nucleus	21.72	50.0
CDY28061	Canola	nucleus	37.71	49.45
CDX86296	Canola	nucleus	22.39	49.08
CDY51061	Canola	nucleus	35.69	48.96
CDY35923	Canola	nucleus, plastid	36.7	48.66
Bra020691.1-P	Field mustard	nucleus	36.36	48.54
AT5G48560.1	Thale cress	nucleus	40.4	48.19
CDX86297	Canola	nucleus	39.39	47.76
CDX85347	Canola	nucleus	39.39	47.66
Bra037478.1-P	Field mustard	nucleus	39.06	47.35
KRH56987	Soybean	plastid	16.84	44.64
KRH03393	Soybean	nucleus	17.0	44.1
KRH45811	Soybean	nucleus	19.53	42.49
KRH63442	Soybean	nucleus	17.34	42.39
KRH69414	Soybean	nucleus	18.01	41.96
KRH69415	Soybean	nucleus	17.85	40.77
KRH54478	Soybean	nucleus	18.18	40.15
KRH74729	Soybean	nucleus	17.34	39.02
KRH52141	Soybean	nucleus	17.51	34.78
KRH24463	Soybean	nucleus	23.4	34.41
KRH29448	Soybean	nucleus	23.91	33.73
KRH51523	Soybean	nucleus	21.89	33.33
KRH63842	Soybean	nucleus	19.19	32.95
KRH41084	Soybean	nucleus	18.35	32.15
KRH54121	Soybean	nucleus	18.86	32.09
KRG95332	Soybean	nucleus	19.36	31.42
KRH71879	Soybean	nucleus	18.69	31.36
KRH59766	Soybean	nucleus	18.01	31.29
KRH33022	Soybean	nucleus	18.52	30.81
KRH61450	Soybean	nucleus	19.36	30.59
KRH15460	Soybean	nucleus	21.89	30.3
KRG88634	Soybean	nucleus, plastid	21.89	29.89
KRH75189	Soybean	nucleus	27.61	29.82
KRH71031	Soybean	nucleus	27.61	29.76
KRH60839	Soybean	nucleus	21.21	29.3
KRH67006	Soybean	nucleus	19.36	28.75

Protein Annotations

EntrezGene:100776143	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EMBL:ACUP02001913	ncoils:Coil
EnsemblPlantsGene:GLYMA_03G086800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:K7KDU9	EnsemblPlants:KRH66158	ProteinID:KRH66158	ProteinID:KRH66158.1
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI00023C23C0	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:25665938..25669690

Molecular Weight (calculated)

64819.5 Da

IEP (calculated)

7.122

GRAVY (calculated)

-0.701

Length

594 amino acids

Sequence
(BLAST)

001: MENQFFLNSG VSQTQHHHPL HLESSPPSNP SSVPSWQSLS PPNMGIQPTV MNCASEQTQQ DCFYNSNWDK STTTDQGLHH FDSSALSSMV SSPAASSNPN
101: NNMSNENFII RELMGKLGAI GNSDEIPQHS PHPLVVASSY MNTKGNNSTN TSCYSTPLSS PPKVNIVNSL VNLRLANLGG GKSTTTVLNS SVAEFSADPG
201: FAERAAKFSC FGSRSFNDRS VQLRVNNAEL AQRSAPAMEH GGKLPRVSSS PLLKTLGSQM GAQENKNSAI HQEQEKMEGA NSQEESTISE QTPNGEIGVK
301: TSQDIMNSRK RKASSKGKAK ETSNTTNPTK GVEGSEYSNS KRSKPNEGNE NGQVKVEEES KAEEEKQSKS NSKPPEPPKD YIHVRARRGQ ATDSHSLAER
401: VRREKISERM KLLQDLVPGC NKVTGKALML DEIINYVQSL QRQVEFLSMK LASVNTRMDL SIESLVTKDV FQSNNSLATH PNAIIFPLGS SAQAFYGHQP
501: QQNNPVFHNN IPNRTVTHCS VDPLDTSLCQ NLAMQLSPLD VFNEGGSQFP LAFLEDDLHT IVQMGFGQAA NRKTPIQSSS FNGSNNVPQM KVEL

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.