Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34530.1 | KRG92422 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | KRH13218 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | KRH34384 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | KRH69122 | AT1G04400.1 | 22739826 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH51523 | Soybean | nucleus | 80.23 | 88.46 |
| KRH24463 | Soybean | nucleus | 49.53 | 52.72 |
| KRH29448 | Soybean | nucleus | 50.47 | 51.54 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 50.93 | 48.34 |
| PGSC0003DMT400001888 | Potato | nucleus | 43.26 | 42.08 |
| Solyc01g109700.2.1 | Tomato | nucleus | 42.33 | 41.94 |
| KRH56987 | Soybean | plastid | 20.23 | 38.84 |
| CDX76288 | Canola | nucleus | 22.33 | 38.4 |
| KRH69414 | Soybean | nucleus | 22.33 | 37.65 |
| KRH03393 | Soybean | nucleus | 20.0 | 37.55 |
| CDY17466 | Canola | nucleus | 23.95 | 37.05 |
| KRH63442 | Soybean | nucleus | 20.93 | 37.04 |
| Bra034636.1-P | Field mustard | nucleus | 24.19 | 37.01 |
| AT4G34530.1 | Thale cress | nucleus | 28.14 | 36.12 |
| KRH74729 | Soybean | nucleus | 22.09 | 35.98 |
| KRH45811 | Soybean | nucleus | 22.56 | 35.53 |
| KRH69415 | Soybean | nucleus | 21.4 | 35.38 |
| Bra011540.1-P | Field mustard | nucleus | 26.74 | 35.06 |
| CDX75440 | Canola | nucleus | 26.74 | 34.95 |
| CDX69067 | Canola | nucleus | 26.51 | 33.53 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 24.42 | 33.23 |
| KRH54478 | Soybean | nucleus | 20.47 | 32.71 |
| Zm00001d051569_P001 | Maize | nucleus | 24.88 | 31.29 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 25.35 | 30.79 |
| TraesCS6B01G300400.1 | Wheat | nucleus | 25.12 | 30.77 |
| EES05656 | Sorghum | nucleus | 25.58 | 30.64 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 25.35 | 30.19 |
| Os02t0705500-01 | Rice | nucleus | 25.12 | 29.92 |
| KRH63842 | Soybean | nucleus | 23.49 | 29.19 |
| Zm00001d017778_P001 | Maize | nucleus | 26.05 | 29.17 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 26.05 | 29.02 |
| KRH54121 | Soybean | nucleus | 23.02 | 28.37 |
| GSMUA_Achr10P... | Banana | nucleus | 25.58 | 27.36 |
| KRH41084 | Soybean | nucleus | 21.16 | 26.84 |
| KRH52141 | Soybean | nucleus | 18.37 | 26.42 |
| KRH59766 | Soybean | nucleus | 20.93 | 26.32 |
| KRG95332 | Soybean | nucleus | 21.16 | 24.86 |
| KRH71879 | Soybean | nucleus | 20.23 | 24.58 |
| KRH61450 | Soybean | nucleus | 21.4 | 24.47 |
| KRH15460 | Soybean | nucleus | 24.19 | 24.24 |
| KRG88634 | Soybean | nucleus, plastid | 24.42 | 24.14 |
| KRH33022 | Soybean | nucleus | 19.77 | 23.81 |
| KRH67006 | Soybean | nucleus | 21.4 | 23.0 |
| KRG99606 | Soybean | nucleus | 30.23 | 22.41 |
| KRH46615 | Soybean | nucleus | 29.77 | 21.84 |
| KRH07417 | Soybean | nucleus, plastid | 29.3 | 21.39 |
| KRH66158 | Soybean | nucleus, plastid | 29.3 | 21.21 |
| KRH71031 | Soybean | nucleus | 26.74 | 20.87 |
| KRH75189 | Soybean | nucleus | 26.51 | 20.73 |
Protein Annotations
| EntrezGene:100798855 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | EMBL:ACUP02002140 | EnsemblPlantsGene:GLYMA_04G012500 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | UniProt:I1JSN8 | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlants:KRH60839 |
| ProteinID:KRH60839 | ProteinID:KRH60839.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 |
| SMART:SM00353 | SUPFAM:SSF47459 | TMHMM:TMhelix | UniParc:UPI00023C1E4D | InterPro:bHLH_dom | SEG:seg |
Description
hypothetical protein
Coordinates
chr4:-:924591..926241
Molecular Weight (calculated)
47587.0 Da
IEP (calculated)
6.366
GRAVY (calculated)
-0.420
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGYANPSGN LAVDGDMTVL ERQRARMKWQ EEQEYFSGNS FNGVFSSSSS LHVPDSIMVA ADSGCALAEV VAQAQPRSIN KPSAAPGLHA NSSSISRTFS
101: CPPALVDPEP KPTDSSIGKD SFKKRKTDKP HNPKVVAENE NKDKRIKVGA DDGESKITKC NTINTNTNNK ETCTDTSNSK QNSKASEKPD YIHVRARRGQ
201: ATDSHSLAER VRREKISERM NYLQDLVPGC NKVTGKAGML DEIINYVQSL QRQVEFLSMK LAAVNPRLDF SMDDLFDKDV FPTCAANFPN IGMSSTSSDI
301: TNPAYLPFNS PQQIFQYDGL DTGINPSDVG LRRTISAPVS MPETYLQSSC FTVGFLSVFT YSLFVILVTF FSQFDLIYVC LQQMLPSSTW EGDFQNLCNF
401: DVDQARATSF PSQLLSGNYK FVPCRITFFP
101: CPPALVDPEP KPTDSSIGKD SFKKRKTDKP HNPKVVAENE NKDKRIKVGA DDGESKITKC NTINTNTNNK ETCTDTSNSK QNSKASEKPD YIHVRARRGQ
201: ATDSHSLAER VRREKISERM NYLQDLVPGC NKVTGKAGML DEIINYVQSL QRQVEFLSMK LAAVNPRLDF SMDDLFDKDV FPTCAANFPN IGMSSTSSDI
301: TNPAYLPFNS PQQIFQYDGL DTGINPSDVG LRRTISAPVS MPETYLQSSC FTVGFLSVFT YSLFVILVTF FSQFDLIYVC LQQMLPSSTW EGDFQNLCNF
401: DVDQARATSF PSQLLSGNYK FVPCRITFFP
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.