Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028335.1-P | Field mustard | nucleus | 97.76 | 65.66 |
| CDY56230 | Canola | nucleus | 94.17 | 63.06 |
| CDX85122 | Canola | nucleus | 79.37 | 53.47 |
| CDX77488 | Canola | nucleus | 77.58 | 52.58 |
| AT3G23690.1 | Thale cress | nucleus | 84.3 | 50.67 |
| CDY64034 | Canola | nucleus | 59.64 | 43.32 |
| CDY08308 | Canola | nucleus | 56.05 | 42.81 |
| CDX76288 | Canola | nucleus | 32.74 | 29.2 |
| CDY33821 | Canola | mitochondrion, plastid | 24.66 | 28.06 |
| CDY25986 | Canola | plastid | 27.35 | 27.98 |
| CDY05670 | Canola | nucleus | 31.39 | 27.13 |
| CDY37979 | Canola | nucleus | 32.29 | 27.07 |
| CDX86296 | Canola | nucleus | 32.74 | 26.94 |
| CDX93427 | Canola | nucleus | 32.29 | 26.87 |
| CDY45806 | Canola | nucleus | 34.98 | 26.62 |
| CDY72360 | Canola | cytosol | 17.49 | 26.0 |
| CDX84885 | Canola | nucleus | 34.53 | 25.93 |
| CDY17466 | Canola | nucleus | 32.29 | 25.9 |
| CDX87255 | Canola | nucleus, plastid | 32.29 | 25.71 |
| CDX98249 | Canola | nucleus | 30.49 | 24.29 |
| CDX75440 | Canola | nucleus | 34.53 | 23.4 |
| CDY31048 | Canola | nucleus | 32.29 | 22.93 |
| CDY63738 | Canola | nucleus | 34.53 | 22.51 |
| CDY20659 | Canola | nucleus | 33.18 | 22.22 |
| CDX69067 | Canola | nucleus | 33.63 | 22.06 |
| Solyc09g097870.2.1 | Tomato | nucleus | 42.15 | 21.81 |
| CDX67710 | Canola | nucleus | 31.39 | 21.74 |
| PGSC0003DMT400042791 | Potato | nucleus | 42.15 | 21.41 |
| Solyc12g098620.1.1 | Tomato | nucleus | 38.56 | 21.29 |
| CDY22605 | Canola | nucleus | 33.63 | 21.25 |
| CDY47665 | Canola | cytosol | 24.22 | 21.01 |
| CDX79883 | Canola | nucleus | 28.25 | 20.86 |
| CDX88966 | Canola | nucleus | 30.94 | 20.78 |
| CDY53834 | Canola | nucleus | 32.29 | 20.75 |
| PGSC0003DMT400011651 | Potato | nucleus | 37.67 | 20.34 |
| CDY53497 | Canola | nucleus | 27.8 | 20.06 |
| CDY06074 | Canola | nucleus | 31.39 | 19.66 |
| CDX71994 | Canola | nucleus | 31.39 | 19.39 |
| CDY57925 | Canola | nucleus | 34.08 | 19.1 |
| CDY51061 | Canola | nucleus | 36.77 | 18.94 |
| CDX85347 | Canola | nucleus | 41.26 | 18.74 |
| CDX86297 | Canola | nucleus | 40.81 | 18.57 |
| CDY35923 | Canola | nucleus, plastid | 35.87 | 17.86 |
| CDY45835 | Canola | nucleus | 35.87 | 17.66 |
| CDY28061 | Canola | nucleus | 35.87 | 17.66 |
| CDY61581 | Canola | plastid | 13.9 | 16.94 |
| VIT_05s0029g00390.t01 | Wine grape | nucleus | 40.36 | 16.54 |
| CDX81575 | Canola | nucleus | 34.98 | 16.42 |
| CDY33568 | Canola | nucleus | 35.43 | 16.39 |
| CDX95974 | Canola | nucleus | 34.98 | 16.28 |
| CDY61420 | Canola | extracellular | 8.52 | 13.97 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 8.52 | 13.77 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078FYB4 | UniProt:A0A078FYB4 | EnsemblPlants:CDY18099 |
| ProteinID:CDY18099 | ProteinID:CDY18099.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00002593001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDE10A | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA01g23600DBnaA01g23600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYB4]
Coordinates
chrLK032082:+:354952..356124
Molecular Weight (calculated)
24272.3 Da
IEP (calculated)
8.809
GRAVY (calculated)
-0.973
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKQTLKYLP LGQSDPFGNG NGNEGTIGDL LGRFCNPQES FSPGIQLPPY PGQFGSDRES NKSSLLDPDS DRVPTTKPNS RKRKSIPVGN GKDSPASSSL
101: TASHSKVSGE NVVSKDGKRS KQDEAGSSKN VIDKCDDSKG DNKDDAKPTK DYIHVRARRG QATDSHSLAE RARREKISER MTMLQDLVPG CNRITGKAVM
201: LDEIINYVQS LQRQVDVGGS DHL
101: TASHSKVSGE NVVSKDGKRS KQDEAGSSKN VIDKCDDSKG DNKDDAKPTK DYIHVRARRG QATDSHSLAE RARREKISER MTMLQDLVPG CNRITGKAVM
201: LDEIINYVQS LQRQVDVGGS DHL
001: MNMDKETEQT LNYLPLGQSD PFGNGNEGTI GDFLGRYCNN PQEISPLTLQ SFSLNSQISE NFPISGGIRF PPYPGQFGSD REFGSQPTTQ ESNKSSLLDP
101: DSVSDRVHTT KSNSRKRKSI PSGNGKESPA SSSLTASNSK VSGENGGSKG GKRSKQDVAG SSKNGVEKCD SKGDNKDDAK PPEAPKDYIH VRARRGQATD
201: SHSLAERARR EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMEFNAN ASLSTEMIQP GESLTQSLYA MACSEQRLPS
301: AYYSLGKNMP RFSDTQFPSN DGFVHTETPG FWENNDLQSI VQMGFGDILQ QQSNNNNNNC SEPTLQMKLE P
101: DSVSDRVHTT KSNSRKRKSI PSGNGKESPA SSSLTASNSK VSGENGGSKG GKRSKQDVAG SSKNGVEKCD SKGDNKDDAK PPEAPKDYIH VRARRGQATD
201: SHSLAERARR EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMEFNAN ASLSTEMIQP GESLTQSLYA MACSEQRLPS
301: AYYSLGKNMP RFSDTQFPSN DGFVHTETPG FWENNDLQSI VQMGFGDILQ QQSNNNNNNC SEPTLQMKLE P
Arabidopsis Description
BHLH77Transcription factor bHLH77 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK48]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.