Factsheet for Solyc02g062690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040021	Potato	nucleus	92.46	93.07
Solyc03g034000.2.1	Tomato	nucleus	46.89	53.76
Solyc03g113560.2.1	Tomato	cytosol	14.75	44.12
Solyc04g005130.2.1	Tomato	nucleus	27.54	37.0
VIT_04s0023g01930.t01	Wine grape	nucleus	42.95	35.79
Solyc05g006650.2.1	Tomato	nucleus	27.21	30.51
TraesCS6B01G300400.1	Wheat	nucleus	33.77	29.34
TraesCS6D01G253000.1	Wheat	nucleus	33.77	29.1
GSMUA_Achr6P09050_001	Banana	nucleus	29.84	28.8
TraesCS6A01G273000.2	Wheat	nucleus	33.77	28.53
Solyc01g109700.2.1	Tomato	nucleus	40.0	28.11
Zm00001d051569_P001	Maize	nucleus	31.15	27.78
Os02t0705500-01	Rice	nucleus	32.79	27.7
Solyc06g072520.1.1	Tomato	nucleus, plastid	26.23	27.68
EES05656	Sorghum	nucleus	32.13	27.3
HORVU6Hr1G068980.2	Barley	nucleus	33.44	26.42
Solyc03g097820.1.1	Tomato	nucleus	28.52	26.36
Zm00001d017778_P001	Maize	nucleus	31.8	25.26
Solyc10g079070.1.1	Tomato	nucleus	29.84	25.21
Solyc09g097870.2.1	Tomato	nucleus	34.1	24.13
Solyc12g098620.1.1	Tomato	nucleus	30.82	23.27
GSMUA_Achr10P...	Banana	nucleus	30.16	22.89
Solyc09g057710.2.1	Tomato	nucleus	35.08	22.57
Solyc04g077480.2.1	Tomato	nucleus	28.2	22.51
Solyc06g083170.2.1	Tomato	nucleus	33.77	22.2
Solyc05g010610.2.1	Tomato	nucleus	35.08	20.7
Solyc01g010130.2.1	Tomato	nucleus	35.41	20.11
Solyc04g005220.1.1	Tomato	nucleus	24.59	17.9

Protein Annotations

EnsemblPlants:Solyc02g062690.2.1	EnsemblPlantsGene:Solyc02g062690.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0002768288	UniProt:K4B6F7	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:

Description

No Description!

Coordinates

chr2:-:34411929..34413488

Molecular Weight (calculated)

34227.7 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.546

Length

305 amino acids

Sequence
(BLAST)

001: MLQMSVLERQ RAVLERIYNH SKQQLSSLVP QQELAHLITG CVQGNFNMFG GGDSNFVNFQ EMARPSFSTI SNSSITTVSP PPEKESDLSS MIAPRENVVS
101: TKKRKAEFIE EEDCEKSPGN DSKENSKTSE VQKPDYIHVR ARRGQATDSH SLAERARREK ISKKMKYLQD LVPGCNKVTG KAGMLDEIIN YVQSLQKQVE
201: FLSMKLATLN PRLDLNTDNI FVKDLPSYMT TTFPPTVAVP TLSEYNMIQH QQAGSTGDVA QMLPQRRDLM SFPDTYLGSS HVTVVQPQQP TFEPDLQSLF
301: SVGFN

Best Arabidopsis Sequence Match ( AT2G18300.2 )
(BLAST)

001: MLEGLVSQES LSLNSMDMSV LERLKWVQQQ QQQLQQVVSH SSNNSPELLQ ILQFHGSNND ELLESSFSQF QMLGSGFGPN YNMGFGPPHE SISRTSSCHM
101: EPVDTMEVLL KTGEETRAVA LKNKRKPEVK TREEQKTEKK IKVEAETESS MKGKSNMGNT EASSDTSKET SKGASENQKL DYIHVRARRG QATDRHSLAE
201: RARREKISKK MKYLQDIVPG CNKVTGKAGM LDEIINYVQC LQRQVEFLSM KLAVLNPELE LAVEDVSVKQ FQAYFTNVVA SKQSIMVDVP LFPLDQQGSL
301: DLSAINPNQT TSIEAPSGSW ETQSQSLYNT SSLGFHY

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.