Factsheet for Solyc05g010610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050585	Potato	nucleus	94.97	94.42
Solyc01g010130.2.1	Tomato	nucleus	62.09	59.78
VIT_01s0010g00740.t01	Wine grape	nucleus	53.19	58.64
Solyc04g005220.1.1	Tomato	nucleus	46.03	56.8
KRH75189	Soybean	nucleus	54.35	51.09
KRH71031	Soybean	nucleus	54.16	50.82
Bra038336.1-P	Field mustard	plastid	34.24	48.49
Solyc03g113560.2.1	Tomato	cytosol	9.48	48.04
AT1G68920.1	Thale cress	nucleus	43.13	45.88
GSMUA_Achr6P36210_001	Banana	nucleus	24.37	45.82
Bra004348.1-P	Field mustard	nucleus	41.59	45.17
CDX95974	Canola	nucleus	41.78	45.09
CDY33568	Canola	nucleus	41.78	44.81
CDY45835	Canola	nucleus	39.27	44.81
CDX81575	Canola	nucleus	40.62	44.21
Zm00001d020826_P001	Maize	nucleus	35.2	41.94
Os09t0474100-01	Rice	nucleus	34.62	41.82
TraesCS5B01G248600.1	Wheat	nucleus	34.24	41.75
KXG35834	Sorghum	nucleus	35.2	41.65
TraesCS5A01G250600.1	Wheat	nucleus	34.24	41.65
TraesCS5D01G258300.1	Wheat	nucleus	34.04	41.51
Zm00001d005964_P002	Maize	nucleus	35.2	40.18
GSMUA_Achr8P24490_001	Banana	nucleus	32.11	40.1
Os06t0275600-01	Rice	cytosol, nucleus	33.08	39.13
Solyc04g005130.2.1	Tomato	nucleus	16.25	37.0
GSMUA_Achr9P28060_001	Banana	nucleus	21.47	36.27
GSMUA_Achr9P18510_001	Banana	nucleus	21.86	36.22
Solyc03g034000.2.1	Tomato	nucleus	18.57	36.09
Solyc02g062690.2.1	Tomato	mitochondrion, nucleus	20.7	35.08
Solyc06g072520.1.1	Tomato	nucleus, plastid	18.96	33.91
GSMUA_Achr3P10600_001	Banana	nucleus	29.59	33.19
Solyc04g077480.2.1	Tomato	nucleus	23.98	32.46
Solyc09g097870.2.1	Tomato	nucleus	26.69	32.02
Solyc05g006650.2.1	Tomato	nucleus	16.83	31.99
Solyc09g057710.2.1	Tomato	nucleus	28.82	31.43
OQU81018	Sorghum	nucleus	22.63	31.2
Solyc12g098620.1.1	Tomato	nucleus	24.18	30.94
Solyc03g097820.1.1	Tomato	nucleus	19.73	30.91
Solyc10g079070.1.1	Tomato	nucleus	20.89	29.92
TraesCS7A01G211900.1	Wheat	nucleus	24.95	29.32
TraesCS7D01G213500.1	Wheat	nucleus	24.76	29.09
TraesCS7B01G118800.1	Wheat	nucleus	24.56	28.86
HORVU0Hr1G020200.1	Barley	nucleus	24.37	28.64
Solyc01g109700.2.1	Tomato	nucleus	23.21	27.65
Solyc06g083170.2.1	Tomato	nucleus	24.76	27.59
Os08t0487700-00	Rice	nucleus	17.99	27.11

Protein Annotations

EnsemblPlants:Solyc05g010610.2.1	EnsemblPlantsGene:Solyc05g010610.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000276702A
UniProt:K4BXN3	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:	:

Description

No Description!

Coordinates

chr5:+:4848664..4852023

Molecular Weight (calculated)

56102.6 Da

IEP (calculated)

5.150

GRAVY (calculated)

-0.740

Length

517 amino acids

Sequence
(BLAST)

001: MDIEIKNDSE PEKRNDQEVS MNYQSPNVSS EWQLNGSNLT NSSMGMVDSF CPTTWDQPTT NSSNLGFCDA SVQMDLGPFR AGVDSTLGPN WTPSNAVLKG
101: GMFLPPVPMM LPQSLAQFPA DSGFIERAAR FSCFSGGNFG DMMNPFSIPE SSMNPYYRGL SSMQGPQEVL ANNGLKSPQK LQHLSNVAES SKDVSLTHRD
201: TQRSPLKNEK KSENVAKSQD EAKEVAGVSG NESDEAGCSG RQEETEGAGE ESCGKNIGSK KRKRGGQDTE PDQMKGAQQP PSEIQKGEQN LNPIASKPGG
301: KNGKQGSQFS DPTKEEYIHV RARRGQATNS HSLAERIRRE KISERMKYLQ DLVPGCNKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRLDFDIDG
401: LLAKDILQSR AGPSSSLAFP PDMTMAYSPL HPPQAGLLQS GLPGYGFPSE GFRRAINPHL ATTSCGPGDY KDPSSQAPNE WDNELHNIVQ MGLNSSVPSS
501: SQDLSGSLPA GQMKAEP

Best Arabidopsis Sequence Match ( AT1G68920.3 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQNSEAAQS HRSQQSEEEP DNNGDEKRND EQSPNSPGKK SNSGKQQGKQ SSDPPKDGYI
301: HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQMDFNL EGLLAKDALQ LRAGSSSTTP
401: FPPNMSMAYP PLPHGFMQQT LSSIGRTITS PLSPMNGGFK RQETNGWEGD LQNVIHINYG AGDVTPDPQA AATASLPAAN MKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.