Factsheet for PGSC0003DMT400050585

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g010610.2.1	Tomato	nucleus	94.42	94.97
PGSC0003DMT400022704	Potato	nucleus	64.04	62.24
PGSC0003DMT400004830	Potato	nucleus	55.38	62.2
VIT_01s0010g00740.t01	Wine grape	nucleus	52.69	58.42
KRH75189	Soybean	nucleus	53.27	50.36
KRH71031	Soybean	nucleus	53.08	50.09
Bra038336.1-P	Field mustard	plastid	34.81	49.59
GSMUA_Achr6P36210_001	Banana	nucleus	24.23	45.82
AT1G68920.1	Thale cress	nucleus	42.69	45.68
Bra004348.1-P	Field mustard	nucleus	41.73	45.59
CDX95974	Canola	nucleus	41.92	45.51
CDY45835	Canola	nucleus	39.62	45.47
CDY33568	Canola	nucleus	41.73	45.02
CDX81575	Canola	nucleus	40.77	44.63
Zm00001d020826_P001	Maize	nucleus	34.81	41.71
TraesCS5B01G248600.1	Wheat	nucleus	33.85	41.51
TraesCS5A01G250600.1	Wheat	nucleus	33.85	41.41
TraesCS5D01G258300.1	Wheat	nucleus	33.65	41.27
KXG35834	Sorghum	nucleus	34.42	40.96
Os09t0474100-01	Rice	nucleus	33.65	40.89
GSMUA_Achr8P24490_001	Banana	nucleus	32.12	40.34
Os06t0275600-01	Rice	cytosol, nucleus	33.65	40.05
Zm00001d005964_P002	Maize	nucleus	34.42	39.51
PGSC0003DMT400004855	Potato	nucleus	16.15	38.01
GSMUA_Achr9P28060_001	Banana	nucleus	21.35	36.27
GSMUA_Achr9P18510_001	Banana	nucleus	21.73	36.22
PGSC0003DMT400058169	Potato	nucleus	18.65	36.19
PGSC0003DMT400040021	Potato	nucleus	20.38	34.98
PGSC0003DMT400069568	Potato	nucleus	18.27	33.45
PGSC0003DMT400012591	Potato	nucleus	24.42	33.25
GSMUA_Achr3P10600_001	Banana	nucleus	29.23	32.97
PGSC0003DMT400058204	Potato	nucleus	16.92	32.59
PGSC0003DMT400042791	Potato	nucleus	27.31	32.35
PGSC0003DMT400062844	Potato	nucleus	18.08	32.3
OQU81018	Sorghum	nucleus	22.31	30.93
PGSC0003DMT400021130	Potato	nucleus	21.35	30.83
PGSC0003DMT400051137	Potato	nucleus	20.0	30.77
PGSC0003DMT400011651	Potato	nucleus	23.85	30.02
PGSC0003DMT400053639	Potato	nucleus	27.88	29.47
TraesCS7A01G211900.1	Wheat	nucleus	24.42	28.86
TraesCS7D01G213500.1	Wheat	nucleus	24.23	28.64
TraesCS7B01G118800.1	Wheat	nucleus	24.04	28.41
HORVU0Hr1G020200.1	Barley	nucleus	23.85	28.18
PGSC0003DMT400051980	Potato	mitochondrion, nucleus	24.62	27.41
PGSC0003DMT400001888	Potato	nucleus	23.08	27.15
Os08t0487700-00	Rice	nucleus	17.88	27.11

Protein Annotations

EntrezGene:102605413	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1BQK5
PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400019659	PGSC:PGSC0003DMG400019659	EnsemblPlants:PGSC0003DMT400050585	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002960278	RefSeq:XP_006348630.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Transcription factor bHLH49 [Source:PGSC_GENE;Acc:PGSC0003DMG400019659]

Coordinates

chr5:-:1128801..1132733

Molecular Weight (calculated)

56516.2 Da

IEP (calculated)

4.984

GRAVY (calculated)

-0.713

Length

520 amino acids

Sequence
(BLAST)

001: MDIEIKNDSE PEKGNDQEVS MNYQSPNISS EWQLNGSNLT NSSMGMVDSF CPTTWDQPTT NSSNLGFCDA SVQMDLGPFR AGVDRTLGPN WTPSNAMLKG
101: GMFLPPVPMM LPQSLAQFPA DSGFIERAAR FSCFSGGNFG DMMNPFSIPE SSMNPYYKGL TPMQGPQEVL ASNGLKSPQK LQHLSNVAES SKDVSLTVAR
201: RDTERSPLKN EKKSENFAKS QDEAKEVAGV SSSESDEAGC SGLQEEMDGA GEESCGKNIG SKKRKRGGQQ DTEPDQMKGA QQPPPEIQKG EQNLNSIASK
301: PGGKNGKQGS QFSDPTKEEY IHVRARRGQA TNSHSLAERI RREKISERMK YLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPRLDFD
401: IDSLLAKDIL QSRAGPSSSL AFPPDMTLAY PPLHPPQAGM LQSSLPGYGF PSEAFRRAIN PHLATTSCGP GDYKDPSSQA PNEWDNELHN VVQMGLNSSV
501: PSSSQDLSGS LPSGQMKAEP

Best Arabidopsis Sequence Match ( AT1G68920.1 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQKNSEAAQ SHRSQQSEEE PDNNGDEKRN DEQSPNSPGK KSNSGKQQGK QSSDPPKDGY
301: IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPQMDFN LEGLLAKDAL QLRAGSSSTT
401: PFPPNMSMAY PPLPHGFMQQ TLSSIGRTIT SPLSPMNGGF KRQETNGWEG DLQNVIHINY GAGDVTPDPQ AAATASLPAA NMKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.