Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g113560.2.1 | Tomato | cytosol | 34.02 | 97.06 |
| VIT_17s0000g05370.t01 | Wine grape | nucleus | 64.26 | 65.85 |
| KRH63442 | Soybean | nucleus | 51.55 | 61.73 |
| Os03t0802900-01 | Rice | nucleus | 54.3 | 59.62 |
| PGSC0003DMT400004855 | Potato | nucleus | 45.02 | 59.28 |
| HORVU5Hr1G107520.2 | Barley | cytosol, nucleus | 41.92 | 58.94 |
| KRH54478 | Soybean | nucleus | 53.26 | 57.62 |
| Os07t0193800-01 | Rice | endoplasmic reticulum | 40.21 | 56.25 |
| GSMUA_Achr9P11020_001 | Banana | nucleus | 49.14 | 55.43 |
| EER90712 | Sorghum | nucleus | 47.77 | 54.94 |
| Zm00001d034503_P002 | Maize | nucleus | 47.42 | 54.12 |
| TraesCS5D01G459800.1 | Wheat | nucleus, plastid | 46.74 | 53.97 |
| Zm00001d007768_P001 | Maize | nucleus | 46.39 | 53.78 |
| TraesCS5B01G457600.1 | Wheat | nucleus, plastid | 46.74 | 53.54 |
| PGSC0003DMT400058204 | Potato | nucleus | 48.11 | 51.85 |
| GSMUA_Achr7P01750_001 | Banana | nucleus | 52.23 | 45.24 |
| GSMUA_Achr4P17570_001 | Banana | golgi, vacuole | 51.2 | 40.6 |
| PGSC0003DMT400058169 | Potato | nucleus | 26.8 | 29.1 |
| PGSC0003DMT400040021 | Potato | nucleus | 27.84 | 26.73 |
| PGSC0003DMT400069568 | Potato | nucleus | 25.77 | 26.41 |
| PGSC0003DMT400051137 | Potato | nucleus | 29.21 | 25.15 |
| PGSC0003DMT400042791 | Potato | nucleus | 37.46 | 24.83 |
| PGSC0003DMT400012591 | Potato | nucleus | 30.24 | 23.04 |
| PGSC0003DMT400011651 | Potato | nucleus | 31.62 | 22.28 |
| PGSC0003DMT400053639 | Potato | nucleus | 36.43 | 21.54 |
| PGSC0003DMT400001888 | Potato | nucleus | 32.65 | 21.49 |
| PGSC0003DMT400021130 | Potato | nucleus | 26.46 | 21.39 |
| PGSC0003DMT400051980 | Potato | mitochondrion, nucleus | 31.62 | 19.7 |
| PGSC0003DMT400004830 | Potato | nucleus | 29.55 | 18.57 |
| PGSC0003DMT400050585 | Potato | nucleus | 32.3 | 18.08 |
| PGSC0003DMT400022704 | Potato | nucleus | 32.3 | 17.57 |
Protein Annotations
| EntrezGene:102600330 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| UniProt:M1C9L8 | PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG401024463 | PGSC:PGSC0003DMG401024463 | EnsemblPlants:PGSC0003DMT400062844 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF305 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002969EC3 | RefSeq:XP_006344980.1 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401024463]
Coordinates
chr3:+:53460253..53464066
Molecular Weight (calculated)
30829.8 Da
IEP (calculated)
5.725
GRAVY (calculated)
-0.589
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPPIINEGS FSAANPSSYT LAEIWPFAAA ANGGGNGELG GGGLGLRMSS FTGLLEAAAN SINESTLTEQ SGRSGGGGGA GGGGGGGNVG VRKRDMNSED
101: DFSKFVSTSD ANDLDGSVAK RLKASQSKEE NGASKVEAES SSHTANKGTE QSSKPEPPKD YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDLVPGC
201: NKVIGKALVL DEIINYIQSL QRQVEFLSMK LEAVNSRMNH PIETYPSKDL APSAFDTTGM IFGTQAPREY AQGAQSEWLH MQVGNSFDRA T
101: DFSKFVSTSD ANDLDGSVAK RLKASQSKEE NGASKVEAES SSHTANKGTE QSSKPEPPKD YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDLVPGC
201: NKVIGKALVL DEIINYIQSL QRQVEFLSMK LEAVNSRMNH PIETYPSKDL APSAFDTTGM IFGTQAPREY AQGAQSEWLH MQVGNSFDRA T
001: MDPPLVNDSS FSAANPSSYT LSEIWPFPVN DAVRSGLRLA VNSGRVFTRS EHSGNKDVSA AEESTVTDLT AGWGSRKTRD LNSEDDSSKM VSSSSSGNEL
101: KESGDKKRKL CGSESGNGDG SMRPEGETSS GGGGSKATEQ KNKPEPPKDY IHVRARRGQA TDRHSLAERA RREKISEKMT ALQDIIPGCN KIIGKALVLD
201: EIINYIQSLQ RQVEFLSMKL EVVNSGASTG PTIGVFPSGD LGTLPIDVHR TIYEQQEANE TRVSQPEWLH MQVDGNFNRT T
101: KESGDKKRKL CGSESGNGDG SMRPEGETSS GGGGSKATEQ KNKPEPPKDY IHVRARRGQA TDRHSLAERA RREKISEKMT ALQDIIPGCN KIIGKALVLD
201: EIINYIQSLQ RQVEFLSMKL EVVNSGASTG PTIGVFPSGD LGTLPIDVHR TIYEQQEANE TRVSQPEWLH MQVDGNFNRT T
Arabidopsis Description
BHLH79Transcription factor bHLH79 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV17]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.