Factsheet for VIT_17s0000g05370.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113560.2.1	Tomato	cytosol	28.87	80.39
KRH63442	Soybean	nucleus	56.69	66.26
PGSC0003DMT400062844	Potato	nucleus	65.85	64.26
KRH54478	Soybean	nucleus	58.8	62.08
VIT_01s0026g01140.t01	Wine grape	nucleus	58.45	59.93
GSMUA_Achr9P11020_001	Banana	nucleus	52.11	57.36
HORVU5Hr1G107520.2	Barley	cytosol, nucleus	40.85	56.04
Zm00001d034503_P002	Maize	nucleus	49.65	55.29
Os03t0802900-01	Rice	nucleus	50.7	54.34
EER90712	Sorghum	nucleus	48.24	54.15
Os07t0193800-01	Rice	endoplasmic reticulum	39.44	53.85
TraesCS5D01G459800.1	Wheat	nucleus, plastid	46.48	52.38
Zm00001d007768_P001	Maize	nucleus	45.42	51.39
TraesCS5B01G457600.1	Wheat	nucleus, plastid	45.77	51.18
GSMUA_Achr7P01750_001	Banana	nucleus	55.28	46.73
GSMUA_Achr4P17570_001	Banana	golgi, vacuole	52.82	40.87
VIT_01s0244g00010.t01	Wine grape	nucleus	27.82	29.26
VIT_17s0000g00430.t01	Wine grape	nucleus	32.39	26.36
VIT_04s0023g01930.t01	Wine grape	nucleus	30.63	23.77
VIT_07s0151g00450.t01	Wine grape	nucleus	33.8	23.13
VIT_08s0007g07870.t01	Wine grape	nucleus	28.87	22.53
VIT_18s0001g08600.t01	Wine grape	nucleus	32.75	21.63
VIT_01s0010g00740.t01	Wine grape	nucleus	35.56	21.54
VIT_03s0038g04760.t01	Wine grape	nucleus	33.1	20.75
VIT_05s0029g00390.t01	Wine grape	nucleus	36.62	19.12

Protein Annotations

EntrezGene:100256975	wikigene:100256975	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	ProteinID:CCB43134
ProteinID:CCB43134.1	ncoils:Coil	UniProt:F6GTC5	EMBL:FN594950	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100256975
wikigene:LOC100256975	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF305	SMART:SM00353
SUPFAM:SSF47459	TIGR:TC58832	UniParc:UPI00015CC2CD	ArrayExpress:VIT_17s0000g05370	EnsemblPlantsGene:VIT_17s0000g05370	EnsemblPlants:VIT_17s0000g05370.t01
unigene:Vvi.13991	RefSeq:XP_002267633	RefSeq:XP_002267633.1	RefSeq:XP_002267823	RefSeq:XP_002267823.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:-:5834834..5839220

Molecular Weight (calculated)

30669.8 Da

IEP (calculated)

5.788

GRAVY (calculated)

-0.567

Length

284 amino acids

Sequence
(BLAST)

001: MDPPLINESS FSAANPSAYS LAEIWPFPVN SASAIGEPTA GLGLRIANFG QIMGQFADSS ANRDVSVDES TVTEQSGSRG GGRKRRDVSS EDESSKIVST
101: SSGSGMNASN GKRMKISRTP DENGGSKAEL EASSVAGEKP AEESKPAEQS KQDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV PGCNKVIGKA
201: LVLDEIINYI QSLQRQVEFL SMKLEAVNSR MNHTVEGFPL KDLGVQTFDA AAMIYGSQAT REYAQGSQPE WLHMQVGGSI ERAS

Best Arabidopsis Sequence Match ( AT5G62610.1 )
(BLAST)

001: MDPPLVNDSS FSAANPSSYT LSEIWPFPVN DAVRSGLRLA VNSGRVFTRS EHSGNKDVSA AEESTVTDLT AGWGSRKTRD LNSEDDSSKM VSSSSSGNEL
101: KESGDKKRKL CGSESGNGDG SMRPEGETSS GGGGSKATEQ KNKPEPPKDY IHVRARRGQA TDRHSLAERA RREKISEKMT ALQDIIPGCN KIIGKALVLD
201: EIINYIQSLQ RQVEFLSMKL EVVNSGASTG PTIGVFPSGD LGTLPIDVHR TIYEQQEANE TRVSQPEWLH MQVDGNFNRT T

Arabidopsis Description

BHLH79Transcription factor bHLH79 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.