Factsheet for VIT_01s0026g01140.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69414	Soybean	nucleus	58.48	63.53
KRH74729	Soybean	nucleus	60.29	63.26
CDY37979	Canola	nucleus	58.48	60.9
CDX93427	Canola	nucleus	57.4	59.33
Bra019935.1-P	Field mustard	nucleus	57.04	58.96
HORVU5Hr1G107520.2	Barley	cytosol, nucleus	43.68	58.45
VIT_17s0000g05370.t01	Wine grape	nucleus	59.93	58.45
Os07t0193800-01	Rice	endoplasmic reticulum	43.68	58.17
GSMUA_Achr9P11020_001	Banana	nucleus	51.99	55.81
Os03t0802900-01	Rice	nucleus	53.07	55.47
Zm00001d034503_P002	Maize	nucleus	49.46	53.73
TraesCS5D01G459800.1	Wheat	nucleus, plastid	48.01	52.78
EER90712	Sorghum	nucleus	48.01	52.57
TraesCS5B01G457600.1	Wheat	nucleus, plastid	47.29	51.57
Zm00001d007768_P001	Maize	nucleus	45.85	50.6
CDY61420	Canola	extracellular	23.1	47.06
GSMUA_Achr7P01750_001	Banana	nucleus	55.96	46.13
GSMUA_Achr4P17570_001	Banana	golgi, vacuole	54.87	41.42
AT1G59640.2	Thale cress	nucleus	48.74	39.36
VIT_01s0244g00010.t01	Wine grape	nucleus	28.16	28.89
VIT_17s0000g00430.t01	Wine grape	nucleus	31.77	25.21
VIT_04s0023g01930.t01	Wine grape	nucleus	31.05	23.5
VIT_07s0151g00450.t01	Wine grape	nucleus	34.3	22.89
VIT_18s0001g08600.t01	Wine grape	nucleus	34.66	22.33
VIT_03s0038g04760.t01	Wine grape	nucleus	35.74	21.85
VIT_08s0007g07870.t01	Wine grape	nucleus	28.16	21.43
VIT_01s0010g00740.t01	Wine grape	nucleus	35.74	21.11
VIT_05s0029g00390.t01	Wine grape	nucleus	34.66	17.65

Protein Annotations

EntrezGene:100265665	wikigene:100265665	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EMBL:AM427643
ProteinID:CAN69076	ProteinID:CAN69076.1	ProteinID:CCB56610	ProteinID:CCB56610.1	ncoils:Coil	UniProt:F6HPI2
EMBL:FN596002	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100265665	wikigene:LOC100265665	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF305	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001982A8A	ArrayExpress:VIT_01s0026g01140
EnsemblPlantsGene:VIT_01s0026g01140	EnsemblPlants:VIT_01s0026g01140.t01	unigene:Vvi.3426	RefSeq:XP_002272776	RefSeq:XP_002272776.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:10146209..10149754

Molecular Weight (calculated)

29574.3 Da

IEP (calculated)

6.262

GRAVY (calculated)

-0.757

Length

277 amino acids

Sequence
(BLAST)

001: MDPPTLINQG ASYHLAEIWN YPISGGGAGE AGGGLELRGG HLGQNLGHFG DNAGVGGANR EASGGGDDPM VLERSGGRKR RDAATEDEGG KAVSTSGGGN
101: VANDCDGKRL KTSGSRDENR DSKTEVETSS GKPVEQNPQS ADPPKQDFIH VRARRGQATD SHSLAERARR EKISERMKIL QDLVPGCNKV IGKALVLDEI
201: INYIQSLQRQ VEFLSMKLEA VNSRMNSGIE GFPSKDFGQQ TFDAAGVAYS SQATREYGRA SSPEWLHMQV GGGFDRT

Best Arabidopsis Sequence Match ( AT1G59640.1 )
(BLAST)

001: MDPSGMMNEG GPFNLAEIWQ FPLNGVSTAG DSSRRSFVGP NQFGDADLTT AANGDPARMS HALSQAVIEG ISGAWKRRED ESKSAKIVST IGASEGENKR
101: QKIDEVCDGK AEAESLGTET EQKKQQMEPT KDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP GCNKVIGKAL VLDEIINYIQ SLQRQVEFLS
201: MKLEAVNSRM NPGIEVFPPK EFGQQAFENP EIQFGSQSTR EYSRGASPEW LHMQIGSGGF ERTS

Arabidopsis Description

BPETranscription factor BPE [Source:UniProtKB/Swiss-Prot;Acc:Q0JXE7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.