Factsheet for PGSC0003DMT400058204

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006650.2.1	Tomato	nucleus	95.93	95.22
PGSC0003DMT400004855	Potato	nucleus	62.22	76.02
Os07t0193800-01	Rice	endoplasmic reticulum	43.33	56.25
HORVU5Hr1G107520.2	Barley	cytosol, nucleus	41.11	53.62
Zm00001d007768_P001	Maize	nucleus	48.15	51.79
GSMUA_Achr9P11020_001	Banana	nucleus	48.89	51.16
Zm00001d034503_P002	Maize	nucleus	48.15	50.98
Os03t0802900-01	Rice	nucleus	50.0	50.94
EER90712	Sorghum	nucleus	46.3	49.41
PGSC0003DMT400062844	Potato	nucleus	51.85	48.11
TraesCS5D01G459800.1	Wheat	nucleus, plastid	44.81	48.02
TraesCS5B01G457600.1	Wheat	nucleus, plastid	44.44	47.24
GSMUA_Achr7P01750_001	Banana	nucleus	50.37	40.48
GSMUA_Achr4P17570_001	Banana	golgi, vacuole	48.89	35.97
PGSC0003DMT400058169	Potato	nucleus	29.26	29.48
PGSC0003DMT400040021	Potato	nucleus	31.48	28.05
PGSC0003DMT400069568	Potato	nucleus	28.15	26.76
PGSC0003DMT400051137	Potato	nucleus	31.48	25.15
PGSC0003DMT400042791	Potato	nucleus	38.89	23.92
PGSC0003DMT400021130	Potato	nucleus	30.37	22.78
PGSC0003DMT400011651	Potato	nucleus	32.96	21.55
PGSC0003DMT400053639	Potato	nucleus	38.89	21.34
PGSC0003DMT400051980	Potato	mitochondrion, nucleus	36.67	21.2
PGSC0003DMT400001888	Potato	nucleus	33.7	20.59
PGSC0003DMT400012591	Potato	nucleus	28.89	20.42
PGSC0003DMT400004830	Potato	nucleus	30.37	17.71
PGSC0003DMT400050585	Potato	nucleus	32.59	16.92
PGSC0003DMT400022704	Potato	nucleus	33.33	16.82

Protein Annotations

EntrezGene:102587955	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:M1C293	PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG401022600	PGSC:PGSC0003DMG401022600	EnsemblPlants:PGSC0003DMT400058204	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF305	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002951E12	RefSeq:XP_006357229.1
InterPro:bHLH_dom	:	:	:	:	:

Description

MYC1 [Source:PGSC_GENE;Acc:PGSC0003DMG401022600]

Coordinates

chr5:+:6478927..6484398

Molecular Weight (calculated)

29466.2 Da

IEP (calculated)

6.372

GRAVY (calculated)

-0.817

Length

270 amino acids

Sequence
(BLAST)

001: MDPQASMMNH AGGFQSPPFN LSEIWQFPIN AGEGETPYSF PSSTAAAQQN VSDVPNNDPM VLDRRTTNYS GGGGGSARKR NEDDESAKGV STSGNGLTES
101: ASKRMKVTRS NENCESRGDG EGNSGKSAEQ PAKLAEPPKD YIHVRARRGQ ATDSHSLAER ARREKISERM KVLQDIVPGC NKVIGKALVL DEIINYIQSL
201: QHQVEFLSMK LEAVNSKMPS IEGYPSKDFG QQPFDTNAMT FGSQATREYA RGTSPDWLHM QLGGGFERTT

Best Arabidopsis Sequence Match ( AT1G59640.1 )
(BLAST)

001: MDPSGMMNEG GPFNLAEIWQ FPLNGVSTAG DSSRRSFVGP NQFGDADLTT AANGDPARMS HALSQAVIEG ISGAWKRRED ESKSAKIVST IGASEGENKR
101: QKIDEVCDGK AEAESLGTET EQKKQQMEPT KDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP GCNKVIGKAL VLDEIINYIQ SLQRQVEFLS
201: MKLEAVNSRM NPGIEVFPPK EFGQQAFENP EIQFGSQSTR EYSRGASPEW LHMQIGSGGF ERTS

Arabidopsis Description

BPETranscription factor BPE [Source:UniProtKB/Swiss-Prot;Acc:Q0JXE7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.