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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plastid 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d014990_P001 Maize cytosol 68.41 81.73
TraesCS6B01G054100.1 Wheat plastid 61.97 75.12
TraesCS6D01G045000.1 Wheat plastid 61.37 74.75
TraesCS6A01G039200.1 Wheat plastid 61.37 74.75
GSMUA_Achr9P23670_001 Banana cytosol 27.77 53.08
Bra029131.1-P Field mustard cytosol 34.61 50.0
CDY38909 Canola cytosol 35.01 49.43
GSMUA_Achr4P11950_001 Banana mitochondrion 29.58 49.33
CDY32590 Canola cytosol 34.81 48.87
Bra026485.1-P Field mustard cytosol 18.31 45.96
CDX87159 Canola cytosol 34.0 45.68
AT5G23730.1 Thale cress nucleus 33.6 45.38
CDY16865 Canola nucleus 33.8 45.28
AT5G52250.1 Thale cress cytosol, plastid 34.61 44.68
PGSC0003DMT400015453 Potato cytosol 32.39 43.51
Solyc11g005190.1.1 Tomato cytosol 31.19 43.06
VIT_16s0050g00020.t01 Wine grape cytosol 36.42 23.51
KXG31183 Sorghum nucleus, plastid 19.72 14.1
OQU87453 Sorghum cytosol 19.92 12.89
EES19971 Sorghum cytosol 20.52 9.04
Os12t0558133-00 Rice endoplasmic reticulum, extracellular 0.4 3.45
Protein Annotations
Gene3D:2.130.10.10MapMan:35.1UniProt:A0A1Z5RL75GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986EnsemblPlants:OQU84205ProteinID:OQU84205ProteinID:OQU84205.1
PFAM:PF00400PFscan:PS50082PFscan:PS50294PANTHER:PTHR45389SMART:SM00320EnsemblPlantsGene:SORBI_3004G011201
SUPFAM:SSF50978UniParc:UPI000B8B98B1InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sf
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr4:-:928737..930406
Molecular Weight (calculated)
52035.4 Da
IEP (calculated)
7.142
GRAVY (calculated)
-0.337
Length
497 amino acids
Sequence
(BLAST)
001: MSNPSSPASS SRSSSAAAQE HRLPEEESQT LHHHNDQEVA SAIAAPFPPS SCEADHQAHD DKDAELSPPR CEWEFRLAAT VPTTALPGAS DAIGSVDFDP
101: TGRLLATGGI ARKIRMYDVA SMLLPLDDSA GARAGPAACI CVPAKLSSVR WRPGGGGDAS SSVVGCGDYD GVVTEYDVER GVASWERDEH AGRRVWSLDY
201: APGSAMAASG SDDRTAHVWD PRAPSGGWAT ARAGGAVLCV EFDPSGAPHL AVGSADRRAV VYDVRALGRG AVARMDGHAR AVTYVRWAGP GPARRVVTSA
301: ADGTHRLWEW SGGASAAAEV VVEAGAAAAA AREVRSYSGH ASARSFVGMG VWRGAGLVAS GSESNHVFVY DLRWAKPIWV HPFFASHGHG GAHGPVTTDA
401: AAAAAAGGFV SAVAWRQGSH NDGDLDGGAL VAGGSDGVLK VFTCRRRRET AGDDVIKKTR VQQQQQQKGQ LKYMFRLKLS EGRGEIKKGG QKMRDCD
Best Arabidopsis Sequence Match ( AT5G52250.1 )
(BLAST)
001: MEALFCSEIP NNNIRSSIND LSSSSSYTWP MIMTSSSSSS SSPTIMNIEN IPRCDWDLSL SAVVSSASTG SDAIGAIEFD PTGEIIATGG IARKIRSYRL
101: SSLLESRDDH VTASESYICT PAKLSSLKWR PDFSGRVIGS GDYDGVVTEY DVEKQVPVSE RDEHGGRRIW SVDYTLYNGS LIGASGSDDG TVQMWDPRNG
201: GTLEETVRPG GGAAICSVEF DPFGGSSIAV GCADRNAYVY DIRRLVDPLI VLDGHTKTVT YARFMDSHTI VTGSTDGSLK QWDIDNGRRV VRTYRGHVNS
301: RNFVGLSVWR HGGLVVSGSE NNQVFVYDKR WEEPVWVCGL GHTNRFGSDR RFVSSVCLRQ VDEDWCTLVA GGSDGALEIF SGKQS
Arabidopsis Description
RUP1WD repeat-containing protein RUP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTJ6]
SUBAcon: [cytosol,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.