CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94317
KRH10462
KRH11182
KRH14801
KRH15950
KRH18185
KRH21072
KRH21073
KRH23810
KRH25071
KRH27796
KRH33363
KRH39972
KRH42547
KRH43086
KRH43983
KRH57651
KRH58640
KRH59212
KRH59213
KRH73341
KRH77746

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13550.1	KRH14801	AT2G32950.1	11877375
AT3G13550.1	KRH73341	AT2G32950.1	11877375
AT3G13550.1	KRH14801	AT2G32950.1	18552200
AT3G13550.1	KRH73341	AT2G32950.1	18552200
AT3G13550.1	KRH25071	AT4G05420.1	16844902
AT3G13550.1	KRH43086	AT4G05420.1	16844902
AT3G13550.1	KRH59212	AT4G05420.1	16844902
AT3G13550.1	KRH59213	AT4G05420.1	16844902
AT3G13550.1	KRH25071	AT4G05420.1	18552200
AT3G13550.1	KRH43086	AT4G05420.1	18552200
AT3G13550.1	KRH59212	AT4G05420.1	18552200
AT3G13550.1	KRH59213	AT4G05420.1	18552200
AT3G13550.1	KRH15950	AT4G10180.1	16844902
AT3G13550.1	KRH18185	AT4G10180.1	16844902
AT3G13550.1	KRH27796	AT4G10180.1	16844902
AT3G13550.1	KRH77746	AT4G10180.1	16844902
AT3G13550.1	KRH15950	AT4G10180.1	18552200
AT3G13550.1	KRH18185	AT4G10180.1	18552200
AT3G13550.1	KRH27796	AT4G10180.1	18552200
AT3G13550.1	KRH77746	AT4G10180.1	18552200
AT3G13550.1	KRH10462	AT4G14110.1	11877375
AT3G13550.1	KRH33363	AT4G14110.1	11877375
AT3G13550.1	KRH43983	AT4G14110.1	11877375
AT3G13550.1	KRG94317	AT5G14250.1	11877375
AT3G13550.1	KRH57651	AT5G14250.1	11877375
AT3G13550.1	KRH23810	AT5G42970.1	11877375
AT3G13550.1	KRH39972	AT5G42970.1	11877375
AT3G13550.1	KRH11182	AT5G46210.1	16844902
AT3G13550.1	KRH21072	AT5G46210.1	16844902
AT3G13550.1	KRH21073	AT5G46210.1	16844902
AT3G13550.1	KRH42547	AT5G46210.1	16844902
AT3G13550.1	KRH58640	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P22180_001	Banana	cytosol	55.68	70.5
VIT_06s0004g00730.t01	Wine grape	plastid	69.89	69.89
AT3G13550.1	Thale cress	mitochondrion	68.75	66.48
Solyc01g005840.2.1	Tomato	plastid	68.18	66.3
Bra027422.1-P	Field mustard	plastid	67.61	65.03
CDY59253	Canola	mitochondrion	67.61	65.03
CDY23617	Canola	plastid	67.05	64.48
TraesCS2A01G187000.1	Wheat	plastid	67.05	62.11
TraesCS2B01G220200.1	Wheat	plastid	66.48	60.94
EER97436	Sorghum	plastid	61.36	57.75
Zm00001d021904_P001	Maize	plastid	60.23	57.61
Os07t0577400-01	Rice	nucleus	65.91	57.43
KRH30665	Soybean	cytosol	41.48	49.32
KRG98118	Soybean	cytosol	40.91	48.65
KRH15985	Soybean	cytosol	40.91	48.65
KRH17206	Soybean	cytosol	40.91	48.65
KRH72837	Soybean	cytosol	40.91	48.65
KRH68874	Soybean	cytosol	40.91	48.65
KRH29288	Soybean	cytosol	40.91	48.65
KRH33057	Soybean	cytosol, nucleus, peroxisome	40.91	48.65
KRH40705	Soybean	cytosol	40.91	48.65
KRH64511	Soybean	cytosol	40.91	48.65
KRH53428	Soybean	cytosol	40.91	48.65
KRH18135	Soybean	cytosol	40.91	48.32
KRH24311	Soybean	cytosol	40.34	47.97
KRH45376	Soybean	cytosol	40.34	47.97
KRH07671	Soybean	cytosol	25.57	46.39
KRH00486	Soybean	cytosol	40.91	45.57
KRH07669	Soybean	cytosol, nucleus, peroxisome	38.07	45.27
KRH21984	Soybean	endoplasmic reticulum, nucleus	31.82	36.6
KRH26227	Soybean	cytosol	31.25	35.95
KRH55097	Soybean	endoplasmic reticulum	30.68	35.29
KRG89662	Soybean	endoplasmic reticulum	30.68	32.34
KRH56939	Soybean	mitochondrion, nucleus	27.27	31.58
KRH63396	Soybean	mitochondrion, nucleus	27.27	31.58
KRH45858	Soybean	mitochondrion, nucleus	27.27	31.58
KRH03443	Soybean	mitochondrion, nucleus	27.27	31.58
KRG99148	Soybean	mitochondrion	23.3	31.3
KRH27335	Soybean	endoplasmic reticulum	26.7	31.13
KRH69329	Soybean	mitochondrion	26.7	30.92
KRH74802	Soybean	mitochondrion	26.7	30.92
KRH54510	Soybean	cytosol, nucleus, plastid	19.89	30.17

Protein Annotations

EntrezGene:100527196	MapMan:19.2.2.8.3.3.1	Gene3D:3.10.110.10	EMBL:ACUP02004832	EnsemblPlantsGene:GLYMA_08G113700	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628
GO:GO:0009791	GO:GO:0010099	UniProt:I1KSB4	InterPro:IPR000608	InterPro:IPR016135	EnsemblPlants:KRH42820
ProteinID:KRH42820	ProteinID:KRH42820.1	PFAM:PF00179	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF41
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00023C589C	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:8722367..8725120

Molecular Weight (calculated)

19228.8 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.284

Length

176 amino acids

Sequence
(BLAST)

001: MMISGGGGGG GKSSWSSSTS SWVPTTSVSA SGKRIQREMV ELNNDPPPDC SAGPKGDNLY HWIATIIGTP ETPYQGGIFF LDIKFPIDYP FKPPEVVFKT
101: RIYHCNVDPD GRVSMGILKD DWSPALTITK VLLEVRSIMT NPDPYNAVVP GIAHLYSGDR AKHDDIAAEW TVRFAK

Best Arabidopsis Sequence Match ( AT3G13550.1 )
(BLAST)

001: MMTPGGSGRL RPLPTAMYAG YSGTASSWVA KTSVSASGKR IQREMAELNI DPPPDCSAGP KGDNLYHWIA TIIGPSGTPY EGGIFFLDII FPSDYPFKPP
101: KLVFKTRIYH CNVDTAGDLS VNILRDSWSP ALTITKVLQA IRSIFLKPEP YSPALPVIAR LYLTDREKHD EVAKEWTLRF AK

Arabidopsis Description

COP10FUS9 [Source:UniProtKB/TrEMBL;Acc:A0A178VI85]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.