CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56939	Soybean	mitochondrion, nucleus	98.03	98.03
KRH63396	Soybean	mitochondrion, nucleus	98.03	98.03
KRH74802	Soybean	mitochondrion	98.03	98.03
KRH54510	Soybean	cytosol, nucleus, plastid	74.34	97.41
VIT_08s0032g00310.t01	Wine grape	mitochondrion, nucleus	97.37	97.37
KRH45858	Soybean	mitochondrion, nucleus	97.37	97.37
KRH03443	Soybean	mitochondrion, nucleus	97.37	97.37
CDY03040	Canola	mitochondrion, nucleus	86.18	92.91
KRG99148	Soybean	mitochondrion	71.71	83.21
VIT_01s0026g01770.t01	Wine grape	plastid	98.03	78.01
KRH15985	Soybean	cytosol	42.76	43.92
KRH68874	Soybean	cytosol	42.76	43.92
KRH64511	Soybean	cytosol	42.76	43.92
KRH24311	Soybean	cytosol	42.76	43.92
KRG98118	Soybean	cytosol	42.76	43.92
KRH33057	Soybean	cytosol, nucleus, peroxisome	42.76	43.92
KRH40705	Soybean	cytosol	42.76	43.92
KRH53428	Soybean	cytosol	42.76	43.92
KRH18135	Soybean	cytosol	42.76	43.62
KRH72837	Soybean	cytosol	42.11	43.24
KRH30665	Soybean	cytosol	42.11	43.24
KRH45376	Soybean	cytosol	42.11	43.24
KRH29288	Soybean	cytosol	42.11	43.24
KRH17206	Soybean	cytosol	42.11	43.24
KRH07669	Soybean	cytosol, nucleus, peroxisome	42.11	43.24
KRH00486	Soybean	cytosol	42.76	41.14
KRH07671	Soybean	cytosol	25.0	39.18
KRH55097	Soybean	endoplasmic reticulum	37.5	37.25
KRH26227	Soybean	cytosol	37.5	37.25
KRH21984	Soybean	endoplasmic reticulum, nucleus	37.5	37.25
KRH27335	Soybean	endoplasmic reticulum	31.58	31.79
KRH42820	Soybean	plastid	30.92	26.7
KRG89662	Soybean	endoplasmic reticulum	28.95	26.35

Protein Annotations

EntrezGene:100499775	MapMan:19.2.2.1.4	Gene3D:3.10.110.10	EMBL:ACUP02000702	EMBL:BT089493	UniProt:C6SWF0
EnsemblPlantsGene:GLYMA_02G020000	GO:GO:0000166	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0016574	GO:GO:0016740
GO:GO:0019538	GO:GO:0031625	GO:GO:0043161	GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135
EnsemblPlants:KRH69329	ProteinID:KRH69329	ProteinID:KRH69329.1	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR43898	PANTHER:PTHR43898:SF5	MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001B14EF3	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:1824031..1827387

Molecular Weight (calculated)

17292.4 Da

IEP (calculated)

4.873

GRAVY (calculated)

-0.522

Length

152 amino acids

Sequence
(BLAST)

001: MSTPARKRLM RDFKRLQLDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLTLQFT EDYPNKPPTV RFVSQMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SENKREYNRR VRDIVEQSWT AD

Best Arabidopsis Sequence Match ( AT1G14400.1 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD

Arabidopsis Description

UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.