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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 2
  • cytosol 4
  • nucleus 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY35126 Canola cytosol 99.35 99.35
Bra026018.1-P Field mustard cytosol 99.35 99.35
Solyc10g007260.2.1 Tomato plastid 99.35 99.35
CDX81788 Canola cytosol 99.35 99.35
CDX83936 Canola cytosol 98.69 98.69
CDY54372 Canola cytosol 98.69 98.69
CDY40025 Canola cytosol 98.69 98.69
KRH21984 Soybean endoplasmic reticulum, nucleus 98.69 98.69
KRH26227 Soybean cytosol 98.69 98.69
PGSC0003DMT400032251 Potato cytosol 98.69 98.69
PGSC0003DMT400054795 Potato cytosol 98.69 98.69
TraesCS3A01G271800.1 Wheat cytosol 98.69 98.69
Bra026700.1-P Field mustard cytosol 98.69 98.69
Bra016626.1-P Field mustard cytosol 98.69 98.69
TraesCS3B01G305500.1 Wheat mitochondrion 98.69 98.69
TraesCS3D01G271400.1 Wheat cytosol 98.69 98.69
Solyc07g062570.2.1 Tomato plastid 98.04 98.04
AT1G78870.2 Thale cress cytosol 98.04 98.04
CDX96802 Canola cytosol 98.04 98.04
CDX87428 Canola cytosol 98.04 98.04
CDY26882 Canola cytosol 92.81 97.93
Bra035071.1-P Field mustard cytosol 88.89 97.84
Os01t0673600-01 Rice extracellular, plasma membrane, plastid 97.39 97.39
CDX88485 Canola cytosol 97.39 97.39
Bra008383.1-P Field mustard cytosol 97.39 97.39
CDY14587 Canola cytosol 97.39 96.75
EES03421 Sorghum cytosol 96.73 96.73
TraesCS1A01G392400.1 Wheat cytosol 96.73 96.73
TraesCS1D01G400600.1 Wheat cytosol 96.73 96.73
KXG35379 Sorghum cytosol 94.77 94.77
CDY57941 Canola cytosol 95.42 94.19
Zm00001d009552_P002 Maize cytosol 97.39 93.71
TraesCS5A01G181700.1 Wheat cytosol 93.46 93.46
TraesCS5B01G179700.1 Wheat cytosol 93.46 93.46
TraesCS5D01G186100.1 Wheat cytosol 93.46 93.46
AT1G16890.3 Thale cress cytosol 98.69 93.21
HORVU5Hr1G055360.2 Barley cytosol, mitochondrion 93.46 92.26
GSMUA_Achr4P31050_001 Banana cytosol 45.75 92.11
Zm00001d038995_P001 Maize cytosol 97.39 91.41
VIT_19s0014g01460.t01 Wine grape cytosol 89.54 88.39
Zm00001d043905_P003 Maize cytosol 96.73 87.57
HORVU1Hr1G086460.1 Barley endoplasmic reticulum, extracellular 54.25 87.37
CDX79272 Canola cytosol 95.42 85.88
HORVU1Hr1G086610.1 Barley cytosol, plastid 96.73 85.06
HORVU1Hr1G086480.1 Barley mitochondrion 94.12 75.0
HORVU3Hr1G061790.1 Barley cytosol 98.69 74.38
KRH27335 Soybean endoplasmic reticulum 73.2 74.17
Zm00001d011565_P002 Maize cytosol, mitochondrion 96.08 73.87
TraesCS1B01G420600.1 Wheat vacuole 83.66 62.44
KRH40705 Soybean cytosol 47.71 49.32
KRG98118 Soybean cytosol 47.71 49.32
KRH17206 Soybean cytosol 47.71 49.32
KRH30665 Soybean cytosol 47.71 49.32
KRH72837 Soybean cytosol 47.71 49.32
KRH24311 Soybean cytosol 47.06 48.65
KRH15985 Soybean cytosol 47.06 48.65
KRH68874 Soybean cytosol 47.06 48.65
KRH64511 Soybean cytosol 47.06 48.65
KRH53428 Soybean cytosol 47.06 48.65
KRH29288 Soybean cytosol 47.06 48.65
KRH18135 Soybean cytosol 46.41 47.65
KRH33057 Soybean cytosol, nucleus, peroxisome 45.75 47.3
KRH45376 Soybean cytosol 45.75 47.3
KRH07669 Soybean cytosol, nucleus, peroxisome 45.1 46.62
KRH00486 Soybean cytosol 47.71 46.2
KRH07671 Soybean cytosol 28.1 44.33
KRH54510 Soybean cytosol, nucleus, plastid 29.41 38.79
KRH03443 Soybean mitochondrion, nucleus 37.25 37.5
KRH45858 Soybean mitochondrion, nucleus 37.25 37.5
KRH56939 Soybean mitochondrion, nucleus 37.25 37.5
KRH63396 Soybean mitochondrion, nucleus 37.25 37.5
KRH69329 Soybean mitochondrion 37.25 37.5
KRH74802 Soybean mitochondrion 37.25 37.5
KRG99148 Soybean mitochondrion 30.07 35.11
KRH42820 Soybean plastid 35.29 30.68
KRG89662 Soybean endoplasmic reticulum 29.41 26.95
Protein Annotations
EntrezGene:100500231MapMan:19.2.2.1.4Gene3D:3.10.110.10EMBL:ACUP02003882EMBL:BT091135UniProt:C6T129
EnsemblPlantsGene:GLYMA_06G230300GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737
GO:GO:0006139GO:GO:0006259GO:GO:0006301GO:GO:0006464GO:GO:0006950GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016740GO:GO:0019538GO:GO:0031625GO:GO:0061630
GO:GO:0070534InterPro:IPR000608InterPro:IPR016135EnsemblPlants:KRH55097ProteinID:KRH55097ProteinID:KRH55097.1
PFAM:PF00179ScanProsite:PS00183PFscan:PS50127PANTHER:PTHR43902PANTHER:PTHR43902:SF4MetaCyc:PWY-7511
SMART:SM00212SUPFAM:SSF54495InterPro:UBQ-conjugat_E2InterPro:UBQ-conjugating_ASInterPro:UBQ-conjugating_enzyme/RWDUniParc:UPI0001B156C9
Description
hypothetical protein
Coordinates
chr6:+:35837467..35842912
Molecular Weight (calculated)
17192.7 Da
IEP (calculated)
6.534
GRAVY (calculated)
-0.312
Length
153 amino acids
Sequence
(BLAST)
001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVE TAKEWTQLYA SGA
Best Arabidopsis Sequence Match ( AT1G16890.2 )
(BLAST)
001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVE TAKEWTRLYA SGA
Arabidopsis Description
UBC36Ubiquitin-conjugating enzyme 36 [Source:UniProtKB/TrEMBL;Acc:F4I615]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.