Factsheet for TraesCS5B01G179700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G181700.1	Wheat	cytosol	100.0	100.0
TraesCS5D01G186100.1	Wheat	cytosol	100.0	100.0
HORVU5Hr1G055360.2	Barley	cytosol, mitochondrion	100.0	98.71
KXG35379	Sorghum	cytosol	97.39	97.39
Solyc10g007260.2.1	Tomato	plastid	94.12	94.12
Bra026018.1-P	Field mustard	cytosol	94.12	94.12
CDY35126	Canola	cytosol	94.12	94.12
PGSC0003DMT400032251	Potato	cytosol	94.12	94.12
CDX81788	Canola	cytosol	94.12	94.12
CDY54372	Canola	cytosol	93.46	93.46
CDY40025	Canola	cytosol	93.46	93.46
KRH21984	Soybean	endoplasmic reticulum, nucleus	93.46	93.46
KRH26227	Soybean	cytosol	93.46	93.46
KRH55097	Soybean	endoplasmic reticulum	93.46	93.46
PGSC0003DMT400054795	Potato	cytosol	93.46	93.46
Solyc07g062570.2.1	Tomato	plastid	93.46	93.46
TraesCS3B01G305500.1	Wheat	mitochondrion	93.46	93.46
CDX96802	Canola	cytosol	93.46	93.46
CDX83936	Canola	cytosol	93.46	93.46
Bra026700.1-P	Field mustard	cytosol	93.46	93.46
Bra016626.1-P	Field mustard	cytosol	93.46	93.46
CDX87428	Canola	cytosol	92.81	92.81
AT1G78870.2	Thale cress	cytosol	92.81	92.81
CDY26882	Canola	cytosol	87.58	92.41
CDX88485	Canola	cytosol	92.16	92.16
Bra008383.1-P	Field mustard	cytosol	92.16	92.16
Bra035071.1-P	Field mustard	cytosol	83.66	92.09
CDY14587	Canola	cytosol	92.16	91.56
GSMUA_Achr4P31050_001	Banana	cytosol	44.44	89.47
CDY57941	Canola	cytosol	90.2	89.03
AT1G16890.3	Thale cress	cytosol	93.46	88.27
VIT_19s0014g01460.t01	Wine grape	cytosol	86.27	85.16
CDX79272	Canola	cytosol	90.2	81.18
KRH27335	Soybean	endoplasmic reticulum	73.2	74.17
TraesCS1B01G420600.1	Wheat	vacuole	80.39	60.0
TraesCS6B01G095200.1	Wheat	cytosol	48.37	49.66
TraesCS3B01G266900.1	Wheat	cytosol	47.71	49.66
TraesCS1B01G311400.1	Wheat	cytosol, nucleus, peroxisome	46.41	47.97
TraesCS3B01G374500.1	Wheat	cytosol, nucleus, peroxisome	46.41	47.97
TraesCS5B01G174300.1	Wheat	cytosol	46.41	47.97
TraesCS7B01G239300.1	Wheat	cytosol, nucleus, peroxisome	45.75	47.3
TraesCS2B01G570100.1	Wheat	cytosol	45.1	46.62
TraesCS3B01G131500.2	Wheat	nucleus	39.22	39.47
TraesCS2B01G270000.2	Wheat	nucleus	37.91	38.16
TraesCS1B01G140300.1	Wheat	mitochondrion	37.91	38.16
TraesCS5B01G431100.1	Wheat	mitochondrion, nucleus	37.91	38.16
TraesCS2B01G220200.1	Wheat	plastid	39.87	31.77

Protein Annotations

EnsemblPlants:TraesCS5B01G179700.1	EnsemblPlantsGene:TraesCS5B01G179700	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR43902	PANTHER:PTHR43902:SF4	PFAM:PF00179	PFscan:PS50127
ScanProsite:PS00183	SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:19.2.2.1.4	:

Description

No Description!

Coordinates

chr5B:-:327598511..327601705

Molecular Weight (calculated)

17287.8 Da

IEP (calculated)

6.535

GRAVY (calculated)

-0.361

Length

153 amino acids

Sequence
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAPPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLADNVAKH WKANETEAVE TAKEWTRVYA NDA

Best Arabidopsis Sequence Match ( AT1G16890.1 )
(BLAST)

001: MRYFNVMILG PTQSPYEGGV FKLELFLPEE YPMAAPKVRF LTKIYHPNID KLGRICLDIL KDKWSPALQI RTVLLSIQAL LSAPNPDDPL SENIAKHWKS
101: NEAEAVETAK EWTRLYASGA

Arabidopsis Description

UBC36Ubiquitin-conjugating enzyme 36 [Source:UniProtKB/TrEMBL;Acc:F4I615]
SUBAcon: [plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.