CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026018.1-P	Field mustard	cytosol	99.35	99.35
CDY35126	Canola	cytosol	99.35	99.35
CDX81788	Canola	cytosol	99.35	99.35
Solyc10g007260.2.1	Tomato	plastid	99.35	99.35
CDX83936	Canola	cytosol	98.69	98.69
TraesCS3D01G271400.1	Wheat	cytosol	98.69	98.69
CDY54372	Canola	cytosol	98.69	98.69
CDY40025	Canola	cytosol	98.69	98.69
TraesCS3B01G305500.1	Wheat	mitochondrion	98.69	98.69
TraesCS3A01G271800.1	Wheat	cytosol	98.69	98.69
PGSC0003DMT400054795	Potato	cytosol	98.69	98.69
KRH21984	Soybean	endoplasmic reticulum, nucleus	98.69	98.69
Bra026700.1-P	Field mustard	cytosol	98.69	98.69
Bra016626.1-P	Field mustard	cytosol	98.69	98.69
PGSC0003DMT400032251	Potato	cytosol	98.69	98.69
KRH55097	Soybean	endoplasmic reticulum	98.69	98.69
CDY26882	Canola	cytosol	93.46	98.62
Solyc07g062570.2.1	Tomato	plastid	98.04	98.04
AT1G78870.2	Thale cress	cytosol	98.04	98.04
Bra008383.1-P	Field mustard	cytosol	98.04	98.04
CDX87428	Canola	cytosol	98.04	98.04
CDX96802	Canola	cytosol	98.04	98.04
Bra035071.1-P	Field mustard	cytosol	88.89	97.84
CDY14587	Canola	cytosol	98.04	97.4
Os01t0673600-01	Rice	extracellular, plasma membrane, plastid	97.39	97.39
CDX88485	Canola	cytosol	97.39	97.39
EES03421	Sorghum	cytosol	96.73	96.73
TraesCS1A01G392400.1	Wheat	cytosol	96.73	96.73
TraesCS1D01G400600.1	Wheat	cytosol	96.73	96.73
KXG35379	Sorghum	cytosol	94.77	94.77
CDY57941	Canola	cytosol	95.42	94.19
Zm00001d009552_P002	Maize	cytosol	97.39	93.71
TraesCS5A01G181700.1	Wheat	cytosol	93.46	93.46
TraesCS5B01G179700.1	Wheat	cytosol	93.46	93.46
TraesCS5D01G186100.1	Wheat	cytosol	93.46	93.46
AT1G16890.3	Thale cress	cytosol	98.69	93.21
HORVU5Hr1G055360.2	Barley	cytosol, mitochondrion	93.46	92.26
GSMUA_Achr4P31050_001	Banana	cytosol	45.75	92.11
Zm00001d038995_P001	Maize	cytosol	97.39	91.41
VIT_19s0014g01460.t01	Wine grape	cytosol	89.54	88.39
Zm00001d043905_P003	Maize	cytosol	96.73	87.57
HORVU1Hr1G086460.1	Barley	endoplasmic reticulum, extracellular	54.25	87.37
CDX79272	Canola	cytosol	95.42	85.88
HORVU1Hr1G086610.1	Barley	cytosol, plastid	96.73	85.06
HORVU1Hr1G086480.1	Barley	mitochondrion	94.12	75.0
HORVU3Hr1G061790.1	Barley	cytosol	98.69	74.38
KRH27335	Soybean	endoplasmic reticulum	73.2	74.17
Zm00001d011565_P002	Maize	cytosol, mitochondrion	96.08	73.87
TraesCS1B01G420600.1	Wheat	vacuole	83.66	62.44
KRH40705	Soybean	cytosol	47.71	49.32
KRG98118	Soybean	cytosol	47.71	49.32
KRH17206	Soybean	cytosol	47.71	49.32
KRH72837	Soybean	cytosol	47.71	49.32
KRH30665	Soybean	cytosol	47.71	49.32
KRH68874	Soybean	cytosol	47.06	48.65
KRH29288	Soybean	cytosol	47.06	48.65
KRH64511	Soybean	cytosol	47.06	48.65
KRH24311	Soybean	cytosol	47.06	48.65
KRH53428	Soybean	cytosol	47.06	48.65
KRH15985	Soybean	cytosol	47.06	48.65
KRH18135	Soybean	cytosol	46.41	47.65
KRH33057	Soybean	cytosol, nucleus, peroxisome	45.75	47.3
KRH45376	Soybean	cytosol	45.75	47.3
KRH07669	Soybean	cytosol, nucleus, peroxisome	45.1	46.62
KRH00486	Soybean	cytosol	47.71	46.2
KRH07671	Soybean	cytosol	28.1	44.33
KRH54510	Soybean	cytosol, nucleus, plastid	29.41	38.79
KRH56939	Soybean	mitochondrion, nucleus	37.25	37.5
KRH03443	Soybean	mitochondrion, nucleus	37.25	37.5
KRH63396	Soybean	mitochondrion, nucleus	37.25	37.5
KRH45858	Soybean	mitochondrion, nucleus	37.25	37.5
KRH74802	Soybean	mitochondrion	37.25	37.5
KRH69329	Soybean	mitochondrion	37.25	37.5
KRG99148	Soybean	mitochondrion	30.07	35.11
KRH42820	Soybean	plastid	35.95	31.25
KRG89662	Soybean	endoplasmic reticulum	28.76	26.35

Protein Annotations

EntrezGene:100804355	MapMan:19.2.2.1.4	Gene3D:3.10.110.10	EMBL:ACUP02007679	EnsemblPlantsGene:GLYMA_12G161200	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259
GO:GO:0006301	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	GO:GO:0061630	GO:GO:0070534	UniProt:I1NE09
InterPro:IPR000608	InterPro:IPR016135	EnsemblPlants:KRH26227	ProteinID:KRH26227	ProteinID:KRH26227.1	PFAM:PF00179
ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43902	PANTHER:PTHR43902:SF4	MetaCyc:PWY-7511	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000233E1D6	:

Description

hypothetical protein

Coordinates

chr12:-:29673720..29680486

Molecular Weight (calculated)

17248.9 Da

IEP (calculated)

7.508

GRAVY (calculated)

-0.303

Length

153 amino acids

Sequence
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVE TAKEWTRLYA SGV

Best Arabidopsis Sequence Match ( AT1G16890.2 )
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVE TAKEWTRLYA SGA

Arabidopsis Description

UBC36Ubiquitin-conjugating enzyme 36 [Source:UniProtKB/TrEMBL;Acc:F4I615]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.