CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0050g02410.t01	Wine grape	cytosol	100.0	100.0
VIT_02s0025g01050.t01	Wine grape	cytosol	100.0	100.0
KRH64511	Soybean	cytosol	98.65	98.65
KRH53428	Soybean	cytosol	98.65	98.65
Solyc06g082600.2.1	Tomato	extracellular	97.97	97.97
Solyc06g007510.2.1	Tomato	cytosol	97.97	97.97
PGSC0003DMT400078296	Potato	cytosol	97.97	97.97
KRH15985	Soybean	cytosol	97.97	97.97
KRH40705	Soybean	cytosol	97.97	97.97
KRH18135	Soybean	cytosol	97.97	97.32
KRH72837	Soybean	cytosol	97.3	97.3
KRH17206	Soybean	cytosol	97.3	97.3
KRH30665	Soybean	cytosol	96.62	96.62
KRG98118	Soybean	cytosol	95.27	95.27
KRH24311	Soybean	cytosol	93.92	93.92
KRH45376	Soybean	cytosol	93.24	93.24
KRH29288	Soybean	cytosol	93.24	93.24
KRH33057	Soybean	cytosol, nucleus, peroxisome	91.89	91.89
KRH00486	Soybean	cytosol	97.97	91.77
KRH07669	Soybean	cytosol, nucleus, peroxisome	88.51	88.51
PGSC0003DMT400053006	Potato	golgi, nucleus, vacuole	97.97	82.86
KRH07671	Soybean	cytosol	52.03	79.38
KRG89662	Soybean	endoplasmic reticulum	62.16	55.09
KRH26227	Soybean	cytosol	48.65	47.06
KRH55097	Soybean	endoplasmic reticulum	48.65	47.06
KRH21984	Soybean	endoplasmic reticulum, nucleus	47.97	46.41
KRH54510	Soybean	cytosol, nucleus, plastid	35.81	45.69
KRH63396	Soybean	mitochondrion, nucleus	43.92	42.76
KRH69329	Soybean	mitochondrion	43.92	42.76
KRH56939	Soybean	mitochondrion, nucleus	43.92	42.76
KRH45858	Soybean	mitochondrion, nucleus	43.92	42.76
KRH74802	Soybean	mitochondrion	43.24	42.11
KRH03443	Soybean	mitochondrion, nucleus	43.24	42.11
KRH42820	Soybean	plastid	48.65	40.91
KRG99148	Soybean	mitochondrion	33.78	38.17
KRH27335	Soybean	endoplasmic reticulum	36.49	35.76

Protein Annotations

EntrezGene:100305945	EntrezGene:100783492	MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EMBL:ACUP02002125	EMBL:BT089800
UniProt:C6SXA6	EnsemblPlantsGene:GLYMA_03G255400	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000608	InterPro:IPR016135	EnsemblPlants:KRH68874
ProteinID:KRH68874	ProteinID:KRH68874.1	ProteinID:KRH68875.1	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR24068	PANTHER:PTHR24068:SF68	MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00015CCCD1	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:45046784..45050438

Molecular Weight (calculated)

16549.0 Da

IEP (calculated)

8.069

GRAVY (calculated)

-0.312

Length

148 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP PDSPYAGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RSKYETTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.