Factsheet for Solyc06g082600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078296	Potato	cytosol	100.0	100.0
Solyc06g007510.2.1	Tomato	cytosol	100.0	100.0
VIT_06s0004g08200.t01	Wine grape	cytosol	97.97	97.97
KRH68874	Soybean	cytosol	97.97	97.97
Solyc10g011740.2.1	Tomato	cytosol	97.3	97.3
Solyc12g056100.1.1	Tomato	cytosol	96.62	96.62
Solyc03g007470.2.1	Tomato	cytosol	96.62	96.62
Solyc05g050230.2.1	Tomato	cytosol	95.95	95.95
Solyc01g095490.2.1	Tomato	cytosol	95.95	95.95
Solyc08g008220.2.1	Tomato	cytosol	95.95	95.95
Solyc08g081950.2.1	Tomato	cytosol	77.03	95.8
Solyc07g066080.2.1	Tomato	cytosol	91.22	91.22
Solyc02g083570.2.1	Tomato	cytosol	87.84	87.84
Solyc03g033410.2.1	Tomato	cytosol, mitochondrion	86.49	86.49
Solyc10g007260.2.1	Tomato	plastid	50.0	48.37
Solyc07g062570.2.1	Tomato	plastid	48.65	47.06
Solyc06g070980.2.1	Tomato	mitochondrion, nucleus	43.24	42.11
Solyc02g087750.2.1	Tomato	mitochondrion, nucleus	43.24	42.11
Solyc02g067420.2.1	Tomato	nucleus	42.57	41.45
Solyc03g113100.2.1	Tomato	mitochondrion, nucleus	42.57	41.45
Solyc01g005840.2.1	Tomato	plastid	49.32	40.33

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	UniProt:B7U4A4	EMBL:FJ429328	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000608	InterPro:IPR016135
EMBL:KY246931	EMBL:KY246932	EMBL:L23762	UniProt:P35135	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF68	SMART:SM00212	SUPFAM:SSF54495	EnsemblPlantsGene:Solyc06g082600.2
EnsemblPlants:Solyc06g082600.2.1	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0000137960	:

Description

Ubiquitin-conjugating enzyme E2-17 kDa [Source:UniProtKB/Swiss-Prot;Acc:P35135]

Coordinates

chr6:-:48367000..48371486

Molecular Weight (calculated)

16522.9 Da

IEP (calculated)

8.069

GRAVY (calculated)

-0.289

Length

148 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP TDSPYAGGVF LVSIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYETTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.