Subcellular Localization
min:
: max
Winner_takes_all: vacuole, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- vacuole 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g007510.2.1 | Tomato | cytosol | 84.57 | 100.0 |
| PGSC0003DMT400078296 | Potato | cytosol | 84.57 | 100.0 |
| KRH68874 | Soybean | cytosol | 82.86 | 97.97 |
| VIT_06s0004g08200.t01 | Wine grape | cytosol | 82.86 | 97.97 |
| PGSC0003DMT400023419 | Potato | cytosol | 81.71 | 96.62 |
| PGSC0003DMT400000272 | Potato | cytosol | 81.14 | 95.95 |
| PGSC0003DMT400084207 | Potato | cytosol | 81.14 | 95.95 |
| PGSC0003DMT400049914 | Potato | cytosol | 81.14 | 95.95 |
| PGSC0003DMT400014816 | Potato | cytosol | 81.14 | 95.95 |
| PGSC0003DMT400032059 | Potato | cytosol | 80.0 | 94.59 |
| PGSC0003DMT400057302 | Potato | cytosol | 78.86 | 93.24 |
| PGSC0003DMT400009229 | Potato | nucleus | 74.86 | 88.51 |
| PGSC0003DMT400058107 | Potato | cytosol, mitochondrion | 72.57 | 85.81 |
| PGSC0003DMT400012799 | Potato | mitochondrion | 81.14 | 84.52 |
| PGSC0003DMT400032251 | Potato | cytosol | 41.71 | 47.71 |
| PGSC0003DMT400054795 | Potato | cytosol | 41.71 | 47.71 |
| PGSC0003DMT400046771 | Potato | mitochondrion, nucleus | 37.14 | 42.76 |
| PGSC0003DMT400017857 | Potato | mitochondrion, nucleus | 36.57 | 42.11 |
| PGSC0003DMT400083067 | Potato | mitochondrion, nucleus | 36.57 | 42.11 |
| PGSC0003DMT400046571 | Potato | mitochondrion, nucleus | 36.0 | 41.45 |
| PGSC0003DMT400003320 | Potato | cytoskeleton, cytosol, nucleus | 36.57 | 32.0 |
Protein Annotations
| EntrezGene:102577791 | EntrezGene:102580937 | MapMan:19.2.2.5.2 | Gene3D:3.10.110.10 | ProteinID:ABB86260 | ProteinID:ABB86260.1 |
| EMBL:DQ284472 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016740 | InterPro:IPR000608 | InterPro:IPR016135 | UniProt:M1BU98 | PFAM:PF00179 | EnsemblPlantsGene:PGSC0003DMG400020569 |
| PGSC:PGSC0003DMG400020569 | EnsemblPlants:PGSC0003DMT400053006 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR24068 | PANTHER:PTHR24068:SF68 |
| SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI000295D507 |
Description
Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020569]
Coordinates
chr6:+:2793021..2795169
Molecular Weight (calculated)
19549.7 Da
IEP (calculated)
7.501
GRAVY (calculated)
-0.059
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKRILKEL KDLQKDPPTS CSAGNLAELF IPLFNLLAFW SYVFLANGTI GPVAEDMFHW QATIMGPTDS PYAGGVFLVS IHFPPDYPFK PPKVAFRTKV
101: FHPNINSNGS ICLDILKEQW SPALTISKVL LSICSLLTDP NPDDPLVPEI AHMYKTDRAK YETTARSWTQ KYAMG
101: FHPNINSNGS ICLDILKEQW SPALTISKVL LSICSLLTDP NPDDPLVPEI AHMYKTDRAK YETTARSWTQ KYAMG
001: MASKRILKEL KDLQKDPPTS CSAVDNASKL LVLIELEDCC RRFSNCSCIL LLEKSQDIAM AHVLLCPVAE DMFHWQATIM GPSDSPYSGG VFLVTIHFPP
101: DYPFKPPKVA FRTKVFHPNV NSNGSICLDI LKEQWSPALT ISKVLLSICS LLTDPNPDDP LVPEIAHMYK TDRAKYESTA RSWTQKYAMG
101: DYPFKPPKVA FRTKVFHPNV NSNGSICLDI LKEQWSPALT ISKVLLSICS LLTDPNPDDP LVPEIAHMYK TDRAKYESTA RSWTQKYAMG
Arabidopsis Description
UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.