Factsheet for PGSC0003DMT400084207

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g050230.2.1	Tomato	cytosol	100.0	100.0
PGSC0003DMT400014816	Potato	cytosol	97.97	97.97
CDY35636	Canola	cytosol	97.97	97.97
CDY14388	Canola	cytosol	97.97	97.97
Bra003066.1-P	Field mustard	cytosol	97.97	97.97
Bra029076.1-P	Field mustard	cytosol	97.3	97.3
AT5G53300.1	Thale cress	cytosol, nucleus, peroxisome	97.3	97.3
CDY49174	Canola	cytosol	97.3	97.3
CDY47067	Canola	cytosol	97.3	97.3
CDX96210	Canola	cytosol	97.3	97.3
Bra022645.1-P	Field mustard	cytosol	97.3	97.3
PGSC0003DMT400049914	Potato	cytosol	96.62	96.62
PGSC0003DMT400000272	Potato	cytosol	95.95	95.95
PGSC0003DMT400078296	Potato	cytosol	95.95	95.95
PGSC0003DMT400023419	Potato	cytosol	95.95	95.95
PGSC0003DMT400032059	Potato	cytosol	94.59	94.59
PGSC0003DMT400057302	Potato	cytosol	92.57	92.57
PGSC0003DMT400009229	Potato	nucleus	89.19	89.19
PGSC0003DMT400058107	Potato	cytosol, mitochondrion	84.46	84.46
PGSC0003DMT400012799	Potato	mitochondrion	95.27	83.93
PGSC0003DMT400053006	Potato	golgi, nucleus, vacuole	95.95	81.14
CDY54342	Canola	cytosol	97.3	78.26
PGSC0003DMT400032251	Potato	cytosol	48.65	47.06
PGSC0003DMT400054795	Potato	cytosol	47.97	46.41
PGSC0003DMT400046771	Potato	mitochondrion, nucleus	45.27	44.08
PGSC0003DMT400017857	Potato	mitochondrion, nucleus	44.59	43.42
PGSC0003DMT400083067	Potato	mitochondrion, nucleus	44.59	43.42
PGSC0003DMT400046571	Potato	mitochondrion, nucleus	43.92	42.76
PGSC0003DMT400003320	Potato	cytoskeleton, cytosol, nucleus	44.59	33.0

Protein Annotations

EntrezGene:102579292	MapMan:19.2.2.5.2	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	UniProt:M1D7K3
PFAM:PF00179	EnsemblPlantsGene:PGSC0003DMG400033877	PGSC:PGSC0003DMG400033877	EnsemblPlants:PGSC0003DMT400084207	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR24068	PANTHER:PTHR24068:SF78	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002767058	RefSeq:XP_006345570.1	:	:	:

Description

Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400033877]

Coordinates

chr5:+:44445347..44448881

Molecular Weight (calculated)

16452.8 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.316

Length

148 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVGEDM FHWQATIMGP SDSPYAGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KSKYEGTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT5G53300.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SESPYAGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTARS WTQKYAMG

Arabidopsis Description

UBC10Ubiquitin-conjugating enzyme E2 10 [Source:UniProtKB/Swiss-Prot;Acc:P35133]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.