Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35636 | Canola | cytosol | 99.32 | 99.32 |
| CDY14388 | Canola | cytosol | 99.32 | 99.32 |
| Bra003066.1-P | Field mustard | cytosol | 99.32 | 99.32 |
| CDY49174 | Canola | cytosol | 98.65 | 98.65 |
| CDY47067 | Canola | cytosol | 98.65 | 98.65 |
| CDX96210 | Canola | cytosol | 98.65 | 98.65 |
| Bra029076.1-P | Field mustard | cytosol | 98.65 | 98.65 |
| Bra022645.1-P | Field mustard | cytosol | 98.65 | 98.65 |
| Solyc08g008220.2.1 | Tomato | cytosol | 97.3 | 97.3 |
| PGSC0003DMT400014816 | Potato | cytosol | 97.3 | 97.3 |
| PGSC0003DMT400084207 | Potato | cytosol | 97.3 | 97.3 |
| Solyc05g050230.2.1 | Tomato | cytosol | 97.3 | 97.3 |
| AT5G41700.4 | Thale cress | cytosol, mitochondrion, peroxisome | 94.59 | 93.96 |
| AT3G08690.1 | Thale cress | cytosol | 93.92 | 93.92 |
| AT5G56150.1 | Thale cress | cytosol, nucleus, peroxisome | 88.51 | 88.51 |
| AT2G16740.1 | Thale cress | cytosol | 87.16 | 87.16 |
| AT4G27960.2 | Thale cress | endoplasmic reticulum, golgi | 97.97 | 81.46 |
| CDY54342 | Canola | cytosol | 98.65 | 79.35 |
| AT3G08700.1 | Thale cress | cytosol | 79.05 | 78.52 |
| AT1G64230.5 | Thale cress | cytosol | 94.59 | 73.68 |
| AT1G78870.2 | Thale cress | cytosol | 47.97 | 46.41 |
| AT5G62540.1 | Thale cress | nucleus | 45.27 | 44.67 |
| AT1G16890.3 | Thale cress | cytosol | 48.65 | 44.44 |
| AT1G36340.2 | Thale cress | cytosol | 45.95 | 44.16 |
| AT1G14400.1 | Thale cress | mitochondrion, nucleus | 43.92 | 42.76 |
| AT2G02760.2 | Thale cress | mitochondrion, nucleus | 43.24 | 42.11 |
| AT3G13550.1 | Thale cress | mitochondrion | 47.3 | 38.46 |
Protein Annotations
| MapMan:19.2.2.5.2 | Gene3D:3.10.110.10 | EntrezGene:835411 | UniProt:A0A178UMJ1 | ProteinID:AED96334.1 | ProteinID:AED96335.1 |
| ProteinID:AED96337.1 | EMBL:AF324718 | EMBL:AF325005 | EMBL:AF326872 | ArrayExpress:AT5G53300 | EnsemblPlantsGene:AT5G53300 |
| RefSeq:AT5G53300 | TAIR:AT5G53300 | RefSeq:AT5G53300-TAIR-G | EnsemblPlants:AT5G53300.1 | TAIR:AT5G53300.1 | EMBL:AY039566 |
| EMBL:AY065059 | EMBL:AY086447 | EMBL:AY113937 | EMBL:AY129488 | ProteinID:BAB09792.1 | EMBL:DQ027024 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005524 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031625 | InterPro:IPR000608 |
| InterPro:IPR016135 | EMBL:L00640 | RefSeq:NP_001190528.1 | RefSeq:NP_568788.1 | RefSeq:NP_851181.1 | ProteinID:OAO94933.1 |
| UniProt:P35133 | PFAM:PF00179 | PO:PO:0000293 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR24068 |
| PANTHER:PTHR24068:SF78 | SMART:SM00212 | SUPFAM:SSF54495 | Symbol:UBC10 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS |
| InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI00000014ED | EMBL:Z14991 | EMBL:Z14993 | : | : |
Description
UBC10Ubiquitin-conjugating enzyme E2 10 [Source:UniProtKB/Swiss-Prot;Acc:P35133]
Coordinates
chr5:-:21632448..21634308
Molecular Weight (calculated)
16537.9 Da
IEP (calculated)
8.068
GRAVY (calculated)
-0.322
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SESPYAGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTARS WTQKYAMG
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTARS WTQKYAMG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.