Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- vacuole 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G08690.1 | Thale cress | cytosol | 81.21 | 81.76 |
| AT5G53300.1 | Thale cress | cytosol, nucleus, peroxisome | 78.52 | 79.05 |
| AT5G56150.1 | Thale cress | cytosol, nucleus, peroxisome | 78.52 | 79.05 |
| AT5G41700.4 | Thale cress | cytosol, mitochondrion, peroxisome | 76.51 | 76.51 |
| AT2G16740.1 | Thale cress | cytosol | 73.15 | 73.65 |
| AT4G27960.2 | Thale cress | endoplasmic reticulum, golgi | 79.87 | 66.85 |
| AT1G64230.5 | Thale cress | cytosol | 76.51 | 60.0 |
| AT1G36340.2 | Thale cress | cytosol | 46.98 | 45.45 |
| AT1G78870.2 | Thale cress | cytosol | 45.64 | 44.44 |
| AT1G14400.1 | Thale cress | mitochondrion, nucleus | 44.97 | 44.08 |
| AT2G02760.2 | Thale cress | mitochondrion, nucleus | 44.3 | 43.42 |
| AT1G16890.3 | Thale cress | cytosol | 45.64 | 41.98 |
| AT5G62540.1 | Thale cress | nucleus | 41.61 | 41.33 |
| AT3G13550.1 | Thale cress | mitochondrion | 46.31 | 37.91 |
Protein Annotations
| MapMan:19.2.2.5.2 | Gene3D:3.10.110.10 | EntrezGene:820017 | ProteinID:AAG51365.1 | ProteinID:AEE74666.1 | ProteinID:ANM65238.1 |
| ArrayExpress:AT3G08700 | EnsemblPlantsGene:AT3G08700 | RefSeq:AT3G08700 | TAIR:AT3G08700 | RefSeq:AT3G08700-TAIR-G | EnsemblPlants:AT3G08700.1 |
| TAIR:AT3G08700.1 | EMBL:BT024821 | EMBL:DQ027026 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR000608 | InterPro:IPR016135 | RefSeq:NP_001319500.1 |
| RefSeq:NP_566332.1 | PFAM:PF00179 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009031 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00183 |
| PFscan:PS50127 | PANTHER:PTHR24068 | PANTHER:PTHR24068:SF55 | UniProt:Q9C9Y7 | SMART:SM00212 | SUPFAM:SSF54495 |
| Symbol:UBC12 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI00000AB081 | : |
Description
UBC12Probable ubiquitin-conjugating enzyme E2 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y7]
Coordinates
chr3:+:2643144..2644775
Molecular Weight (calculated)
16710.9 Da
IEP (calculated)
8.075
GRAVY (calculated)
-0.519
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKRISREL RDMQRHPPAN CSAGPVAEED IFHWQATIMG PHDSPYSGGV FTVSIDFSSD YPFKPPKVNF KTKVYHPNID SKGSICLDIL KEQWSPAPTT
101: SKVLLSICSL LTDPNPNDPL VPEIAHLYKV DKSKYESTAQ KWTQKYAMG
101: SKVLLSICSL LTDPNPNDPL VPEIAHLYKV DKSKYESTAQ KWTQKYAMG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.