CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003066.1-P	Field mustard	cytosol	100.0	100.0
CDY35636	Canola	cytosol	100.0	100.0
AT5G53300.1	Thale cress	cytosol, nucleus, peroxisome	99.32	99.32
CDY49174	Canola	cytosol	99.32	99.32
CDY47067	Canola	cytosol	99.32	99.32
CDX96210	Canola	cytosol	99.32	99.32
Solyc08g008220.2.1	Tomato	cytosol	97.97	97.97
Solyc05g050230.2.1	Tomato	cytosol	97.97	97.97
PGSC0003DMT400084207	Potato	cytosol	97.97	97.97
PGSC0003DMT400014816	Potato	cytosol	97.97	97.97
CDY34409	Canola	cytosol	95.95	95.95
CDY25571	Canola	cytosol	95.95	95.95
CDY17396	Canola	cytosol	85.81	85.81
CDY51965	Canola	cytosol	85.81	85.81
CDX76970	Canola	cytosol	85.14	85.14
CDX71304	Canola	cytosol, mitochondrion, nucleus	83.78	83.78
CDY68877	Canola	cytosol, mitochondrion	90.54	83.75
CDY06521	Canola	cytosol, plastid	90.54	83.75
CDY31408	Canola	cytosol	83.11	83.11
CDY02238	Canola	cytosol	80.41	80.41
CDY54342	Canola	cytosol	99.32	79.89
CDX89747	Canola	cytosol	79.73	79.73
CDY08368	Canola	cytosol	85.14	79.25
CDY11958	Canola	cytosol	89.86	76.88
CDY38184	Canola	cytosol	86.49	71.11
CDY39254	Canola	cytosol	55.41	70.69
CDY36778	Canola	cytosol	89.19	60.83
CDY23674	Canola	cytosol	44.59	59.46
CDX73346	Canola	cytosol	44.59	59.46
CDY37098	Canola	cytosol	43.92	58.56
CDY06520	Canola	cytosol	56.76	54.19
CDX83936	Canola	cytosol	49.32	47.71
CDY40025	Canola	cytosol	49.32	47.71
CDY54372	Canola	cytosol	49.32	47.71
CDY65274	Canola	cytosol	46.62	47.26
CDY35126	Canola	cytosol	48.65	47.06
CDX88485	Canola	cytosol	48.65	47.06
CDX81788	Canola	cytosol	48.65	47.06
CDX87428	Canola	cytosol	48.65	47.06
CDY14587	Canola	cytosol	48.65	46.75
CDX96802	Canola	cytosol	47.97	46.41
CDY26882	Canola	cytosol	44.59	45.52
CDY57941	Canola	cytosol	47.3	45.16
CDY66232	Canola	mitochondrion, nucleus	45.27	44.67
CDY30726	Canola	mitochondrion, nucleus	45.27	44.67
CDY39315	Canola	mitochondrion	43.24	42.11
CDY11654	Canola	mitochondrion	43.24	42.11
CDY38761	Canola	mitochondrion	43.24	42.11
CDX79272	Canola	cytosol	47.3	41.18
CDY03040	Canola	mitochondrion, nucleus	38.51	40.43
CDY59253	Canola	mitochondrion	46.62	37.7
CDY23617	Canola	plastid	46.62	37.7
CDX84034	Canola	nucleus	27.03	37.38
CDY68969	Canola	mitochondrion	35.14	35.86
CDX73344	Canola	cytosol	37.16	33.54
CDX96859	Canola	mitochondrion	41.22	32.28

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	GO:A0A078FPW9	UniProt:A0A078FPW9	EnsemblPlants:CDY14388	ProteinID:CDY14388
ProteinID:CDY14388.1	ProteinID:CDY35636.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00079031001	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179
ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF78	MetaCyc:PWY-7511	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143	UniParc:UPI0001890C5F

Description

BnaA10g06670DBnaA10g06670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPW9]

Coordinates

chrLK032042:+:650325..651916

Molecular Weight (calculated)

16523.9 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.322

Length

148 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYAGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT5G53300.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SESPYAGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTARS WTQKYAMG

Arabidopsis Description

UBC10Ubiquitin-conjugating enzyme E2 10 [Source:UniProtKB/Swiss-Prot;Acc:P35133]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.