Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028946.1-P | Field mustard | cytosol | 70.69 | 58.57 |
| AT5G56150.1 | Thale cress | cytosol, nucleus, peroxisome | 73.28 | 57.43 |
| CDY68877 | Canola | cytosol, mitochondrion | 76.72 | 55.62 |
| CDY06521 | Canola | cytosol, plastid | 76.72 | 55.62 |
| CDY14388 | Canola | cytosol | 70.69 | 55.41 |
| CDY25571 | Canola | cytosol | 70.69 | 55.41 |
| CDY34409 | Canola | cytosol | 70.69 | 55.41 |
| CDY35636 | Canola | cytosol | 70.69 | 55.41 |
| CDY17396 | Canola | cytosol | 69.83 | 54.73 |
| CDX96210 | Canola | cytosol | 69.83 | 54.73 |
| CDY47067 | Canola | cytosol | 69.83 | 54.73 |
| CDY49174 | Canola | cytosol | 69.83 | 54.73 |
| CDY51965 | Canola | cytosol | 68.97 | 54.05 |
| CDX76970 | Canola | cytosol | 68.97 | 54.05 |
| CDY11958 | Canola | cytosol | 78.45 | 52.6 |
| CDY02238 | Canola | cytosol | 63.79 | 50.0 |
| CDX89747 | Canola | cytosol | 62.93 | 49.32 |
| CDY31408 | Canola | cytosol | 62.93 | 49.32 |
| CDX71304 | Canola | cytosol, mitochondrion, nucleus | 62.93 | 49.32 |
| CDY08368 | Canola | cytosol | 62.07 | 45.28 |
| CDY54342 | Canola | cytosol | 69.83 | 44.02 |
| CDY36778 | Canola | cytosol | 78.45 | 41.94 |
| CDY38184 | Canola | cytosol | 61.21 | 39.44 |
| CDY06520 | Canola | cytosol | 46.55 | 34.84 |
| CDY23617 | Canola | plastid | 41.38 | 26.23 |
| CDY59253 | Canola | mitochondrion | 40.52 | 25.68 |
| CDY23674 | Canola | cytosol | 23.28 | 24.32 |
| CDX73346 | Canola | cytosol | 23.28 | 24.32 |
| CDY37098 | Canola | cytosol | 23.28 | 24.32 |
| CDX84034 | Canola | nucleus | 21.55 | 23.36 |
| CDY39315 | Canola | mitochondrion | 30.17 | 23.03 |
| CDY54372 | Canola | cytosol | 30.17 | 22.88 |
| CDX83936 | Canola | cytosol | 30.17 | 22.88 |
| CDY03040 | Canola | mitochondrion, nucleus | 27.59 | 22.7 |
| CDY66232 | Canola | mitochondrion, nucleus | 29.31 | 22.67 |
| CDY30726 | Canola | mitochondrion, nucleus | 29.31 | 22.67 |
| CDY57941 | Canola | cytosol | 30.17 | 22.58 |
| CDY11654 | Canola | mitochondrion | 29.31 | 22.37 |
| CDY38761 | Canola | mitochondrion | 29.31 | 22.37 |
| CDX87428 | Canola | cytosol | 29.31 | 22.22 |
| CDY40025 | Canola | cytosol | 29.31 | 22.22 |
| CDX88485 | Canola | cytosol | 29.31 | 22.22 |
| CDX81788 | Canola | cytosol | 29.31 | 22.22 |
| CDY35126 | Canola | cytosol | 29.31 | 22.22 |
| CDY14587 | Canola | cytosol | 29.31 | 22.08 |
| CDY65274 | Canola | cytosol | 27.59 | 21.92 |
| CDX96802 | Canola | cytosol | 28.45 | 21.57 |
| CDX79272 | Canola | cytosol | 30.17 | 20.59 |
| CDY26882 | Canola | cytosol | 25.0 | 20.0 |
| CDX96859 | Canola | mitochondrion | 28.45 | 17.46 |
| CDY68969 | Canola | mitochondrion | 21.55 | 17.24 |
| CDX73344 | Canola | cytosol | 18.97 | 13.41 |
Protein Annotations
| EnsemblPlants:CDY39254 | EnsemblPlantsGene:GSBRNA2T00067480001 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR24068 | PANTHER:PTHR24068:SF117 | PFAM:PF00179 | PFscan:PS50127 | ProteinID:CDY39254 |
| ProteinID:CDY39254.1 | SMART:SM00212 | SUPFAM:SSF54495 | UniParc:UPI0004EE6FE2 | UniProt:A0A078HPB7 | MapMan:35.1 |
Description
BnaC06g27370DBnaC06g27370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPB7]
Coordinates
chrLK032444:-:41751..42421
Molecular Weight (calculated)
13004.4 Da
IEP (calculated)
6.940
GRAVY (calculated)
-0.342
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKRINKEL RDLQRDPPVS CSAGPVCDDM FHWQATIMSP SDSPFSGDVF LVSIHFPPDY PFKPPKIDVG FSTGSSVDII IADRSKPVPE IAHTYKTYHV
101: NYESIARSWT QKYAIG
101: NYESIARSWT QKYAIG
001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG
Arabidopsis Description
UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.