CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14801
KRH73341

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63860.1	KRH14801	AT2G32950.1	19165148
AT5G63860.1	KRH73341	AT2G32950.1	19165148

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63996	Soybean	nucleus	90.08	88.59
KRH59606	Soybean	cytosol	70.25	76.2
VIT_07s0031g02560.t01	Wine grape	cytosol	71.31	75.96
Bra029198.1-P	Field mustard	cytosol	65.19	75.0
AT5G63860.1	Thale cress	cytosol	69.62	75.0
CDY31347	Canola	cytosol	68.57	74.54
Bra037755.1-P	Field mustard	cytosol	65.4	74.52
Bra024242.1-P	Field mustard	cytosol	64.14	73.97
CDX81201	Canola	cytosol	68.57	73.86
CDY43762	Canola	cytosol	66.67	73.83
CDY60046	Canola	cytosol	69.62	73.66
Solyc05g018620.2.1	Tomato	cytosol	47.05	72.64
CDY39843	Canola	cytosol	61.81	72.52
KRH40960	Soybean	cytosol	51.27	71.89
CDX84451	Canola	cytosol	67.51	71.75
GSMUA_Achr6P17690_001	Banana	cytosol	65.61	70.84
GSMUA_Achr3P19000_001	Banana	nucleus	66.67	70.38
EES10837	Sorghum	cytosol	65.19	69.75
Zm00001d003632_P003	Maize	extracellular	64.56	69.07
Os04t0435700-01	Rice	plasma membrane	65.61	68.65
HORVU2Hr1G076180.1	Barley	cytosol, endoplasmic reticulum	63.71	68.48
TraesCS2B01G323100.1	Wheat	unclear	63.71	68.33
TraesCS2D01G304900.2	Wheat	cytosol	63.71	68.17
TraesCS2A01G306400.3	Wheat	cytosol	63.5	67.95
Os02t0554100-01	Rice	cytosol, plasma membrane	64.56	67.55
TraesCS6D01G142500.1	Wheat	golgi	60.97	65.68
TraesCS6B01G180900.1	Wheat	cytosol	56.12	65.68
HORVU6Hr1G030600.2	Barley	plasma membrane	60.97	65.38
TraesCS6A01G153100.1	Wheat	golgi	61.6	62.13
KRH63955	Soybean	mitochondrion	23.42	26.62
KRH53977	Soybean	cytosol, mitochondrion, nucleus	17.72	26.25
KRG93861	Soybean	nucleus	21.31	25.57
KRH46563	Soybean	mitochondrion	21.94	23.42
KRH49501	Soybean	cytosol	7.81	21.39
KRH01383	Soybean	cytosol	21.31	21.31
KRH45102	Soybean	cytosol, nucleus, peroxisome	21.31	21.31
KRH22127	Soybean	cytosol	21.52	21.03
KRH08750	Soybean	cytosol	28.06	20.88
KRH30228	Soybean	cytosol	17.72	20.64
KRH27216	Soybean	cytosol	21.52	20.2
KRH74759	Soybean	nucleus	23.0	19.36
KRG97505	Soybean	cytosol	21.73	19.25
KRH69375	Soybean	nucleus	23.84	19.12
KRH31377	Soybean	cytosol	21.31	19.02
KRH59226	Soybean	cytosol	19.62	17.42
KRH45886	Soybean	nucleus	30.17	15.02
KRG99112	Soybean	cytosol	30.17	14.59
KRH73555	Soybean	nucleus	32.7	13.99
KRH40796	Soybean	cytosol	21.94	13.87
KRG99075	Soybean	nucleus	32.28	13.83
KRH14571	Soybean	nucleus	32.28	13.82
KRH45937	Soybean	nucleus	32.28	13.8
KRG91629	Soybean	cytosol	30.8	13.3
KRH00393	Soybean	cytosol	29.75	13.19
KRH70333	Soybean	cytosol	30.8	13.04
KRH35179	Soybean	cytosol	30.59	12.95
KRG98005	Soybean	cytosol	28.9	12.8
KRH69117	Soybean	cytosol	29.11	12.8
KRH31700	Soybean	cytosol	28.9	12.71
KRH30884	Soybean	cytosol	28.27	12.48
KRH65503	Soybean	cytosol, mitochondrion, nucleus	26.58	12.05
KRH08736	Soybean	endoplasmic reticulum	15.19	10.33
KRH30227	Soybean	cytosol	6.54	6.87

Protein Annotations

Gene3D:2.130.10.30	MapMan:26.1.3.1	EMBL:ACUP02003491	EnsemblPlantsGene:GLYMA_06G156400	GO:GO:0003674	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009628
GO:GO:0009881	GO:GO:0009987	GO:GO:0010224	GO:GO:0038023	GO:GO:0042803	UniProt:I1KBN0
InterPro:IPR000408	InterPro:IPR009091	EnsemblPlants:KRH53944	ProteinID:KRH53944	ProteinID:KRH53944.1	PFAM:PF00415
PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF317	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SUPFAM:SSF50985	UniParc:UPI000295A04A	InterPro:UVR8	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:12832004..12842223

Molecular Weight (calculated)

50755.6 Da

IEP (calculated)

5.835

GRAVY (calculated)

-0.228

Length

474 amino acids

Sequence
(BLAST)

001: MLHSSSLLFL SPSTGPINVI NPCPSFSSLF PPITMELEVT AATSPPSRVL LISAGASHTV ALLSGNVVCS WGRGEDGQLG HGDTDDRLLP THLSALDAQQ
101: IDSIACGADH TLAYSESRNE LYSWGWGDFG RLGHGNSSDL LIPQPIIALQ GLRIKQIACG DSHCLAVTME GEVQSWGRNQ NGQLGLGTSE DSLVPQKIQT
201: FQGVPIKMVA AGAEHSVAIT ENGELYGWGW GRYGNLGLGD RNDRWIPEKV SSVDCDKMVM VACGWRHTIS VSSLGGLYTY GWSKYGQLGH GNFEDSLVPQ
301: KLQALSDKLI SQVSGGWRHS MALTSTGLLY GWGWNKFGQV GVGDNVDRCS PVQVKFPHDQ KVVQISCGWR HTIAVTEKEN VFSWGRGTNG QLGHGDTVDR
401: NSPKIIEALS VDGSSGPHIE SSNTDLLSGK SGASLSERYA VVPDETVSGQ TASSSSGDRL DISVPESDVK RIRV

Best Arabidopsis Sequence Match ( AT5G63860.1 )
(BLAST)

001: MAEDMAADEV TAPPRKVLII SAGASHSVAL LSGDIVCSWG RGEDGQLGHG DAEDRPSPTQ LSALDGHQIV SVTCGADHTV AYSQSGMEVY SWGWGDFGRL
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI

Arabidopsis Description

UVR8Ultraviolet-B receptor UVR8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.