CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45937	Soybean	nucleus	96.65	96.39
KRH73555	Soybean	nucleus	88.34	88.18
KRH14571	Soybean	nucleus	87.97	87.9
VIT_06s0009g03550.t01	Wine grape	nucleus	85.44	85.37
Solyc11g065120.1.1	Tomato	cytosol	82.73	81.05
Solyc12g099740.1.1	Tomato	nucleus	74.14	80.0
AT5G12350.1	Thale cress	nucleus	77.31	79.53
CDX85690	Canola	nucleus	75.77	78.32
CDX69686	Canola	nucleus	75.59	78.13
Bra008895.1-P	Field mustard	nucleus	75.14	78.1
CDX91165	Canola	nucleus	75.77	78.1
CDX97187	Canola	nucleus	74.59	77.98
Bra006504.1-P	Field mustard	cytosol	77.12	77.33
AT5G19420.2	Thale cress	mitochondrion	78.75	76.47
GSMUA_Achr5P08220_001	Banana	cytosol	75.59	76.0
Bra023374.1-P	Field mustard	nucleus	76.04	75.63
CDX88891	Canola	cytosol, mitochondrion, nucleus	77.31	75.33
CDX70876	Canola	cytosol	75.59	74.98
CDX92532	Canola	nucleus	75.5	74.96
CDY13998	Canola	nucleus	74.95	74.28
Zm00001d042074_P001	Maize	cytosol	73.24	74.24
TraesCS1A01G240600.2	Wheat	cytosol	73.51	74.11
TraesCS1B01G252700.2	Wheat	cytosol	73.33	74.06
Os05t0384800-01	Rice	cytosol	72.69	74.03
TraesCS1D01G240700.1	Wheat	cytosol	73.15	74.02
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	62.57	74.01
KXG34127	Sorghum	cytosol	61.3	73.54
Bra002235.1-P	Field mustard	nucleus	73.96	73.43
HORVU0Hr1G028990.2	Barley	cytosol	26.13	73.35
Zm00001d011851_P001	Maize	cytosol	73.33	72.54
HORVU1Hr1G056870.2	Barley	cytosol, endoplasmic reticulum, nucleus	73.69	72.44
TraesCS3B01G543500.1	Wheat	cytosol	70.34	71.44
TraesCS3D01G489600.1	Wheat	cytosol	70.16	71.26
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	70.16	70.61
Os01t0952300-00	Rice	cytosol	71.34	69.03
KRH45886	Soybean	nucleus	52.26	60.71
KRH08750	Soybean	cytosol	34.63	60.13
KRG99112	Soybean	cytosol	51.36	57.96
KRH30228	Soybean	cytosol	19.8	53.81
KRG91629	Soybean	cytosol	52.62	53.01
KRH35179	Soybean	cytosol	53.44	52.77
KRH70333	Soybean	cytosol	51.9	51.25
KRH08736	Soybean	endoplasmic reticulum	30.56	48.49
KRH69117	Soybean	cytosol	44.21	45.36
KRH31700	Soybean	cytosol	44.03	45.18
KRH00393	Soybean	cytosol	43.58	45.09
KRH40796	Soybean	cytosol	29.93	44.13
KRH30227	Soybean	cytosol	17.63	43.24
KRG98005	Soybean	cytosol	39.78	41.12
KRH30884	Soybean	cytosol	39.69	40.88
KRH65503	Soybean	cytosol, mitochondrion, nucleus	33.27	35.18
KRH59606	Soybean	cytosol	13.65	34.55
KRH40960	Soybean	cytosol	10.13	33.14
KRH53944	Soybean	plastid	13.83	32.28
KRH63996	Soybean	nucleus	13.74	31.54
KRH63955	Soybean	mitochondrion	11.75	31.18
KRH53977	Soybean	cytosol, mitochondrion, nucleus	8.77	30.31
KRH22127	Soybean	cytosol	13.29	30.31
KRH27216	Soybean	cytosol	13.56	29.7
KRG93861	Soybean	nucleus	10.04	28.1
KRH46563	Soybean	mitochondrion	11.21	27.93
KRH45102	Soybean	cytosol, nucleus, peroxisome	11.93	27.85
KRH49501	Soybean	cytosol	4.34	27.75
KRG97505	Soybean	cytosol	13.38	27.66
KRH31377	Soybean	cytosol	13.11	27.31
KRH01383	Soybean	cytosol	11.48	26.79
KRH74759	Soybean	nucleus	13.02	25.58
KRH59226	Soybean	cytosol	12.3	25.47
KRH69375	Soybean	nucleus	13.02	24.37

Protein Annotations

EntrezGene:100791947	Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02010960
InterPro:BRX_N	InterPro:Brevis_radix_dom	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G119000	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	UniProt:I1N146	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993
InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	EnsemblPlants:KRG99075	ProteinID:KRG99075	ProteinID:KRG99075.1
PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	PFAM:PF16627
InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178
PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF301	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064
SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI000233E6DC	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel
InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:14688878..14706389

Molecular Weight (calculated)

120425.0 Da

IEP (calculated)

9.319

GRAVY (calculated)

-0.538

Length

1106 amino acids

Sequence
(BLAST)

0001: MSRTDTMTTS DLNRTGPVER DIEQAITALK KGAYLLKYGR RGKPKFCPFR LSNDESILIW FSGKEEKRLK LTNVSRIISG QRTPIFQRYP RPEKEYQSFS
0101: LIYNDRSLDL ICKDKDEAEV WFSGLKALIS RSHHRKWRPE SRSDGIPSEA NSPRTYTRRS SPLNSPFGSN ESLQKDSGDH LRLHSPYESP PKNGLDKAFS
0201: DVIYYPIPPM GFFRPDSASG SLHSVSSGGS DSMHGQMKTM PMDAFRVSLS SAVSSSSQGS GHDDGDALGD VFIWGEGMGD GVLGGGVHQV GSNFGVKMDS
0301: LLPKALESAV VLDVQNIACG GKHAALVTKQ GEVFSWGEES GGRLGHGVDS DVPHPKLIES LSNTNIELVA CGEYHTCAVT LSGDLYTWGD GTYNYGLLGH
0401: GNQVSHWVPK RVNGPLEGIH VSSISCGPWH TAVVTSSGQL FTFGDGTFGA LGHGDRKSVS LPREIESLKG LRTVQAACGV WHTAAVVEVM VGNSSSSNCS
0501: SGKLFTWGDG DKGRLGHGDK ESKLVPTCVV TLVEPNCQVA CGHSMTVALS RSGHVYTMGS CVYGQLGNTQ ADGKLPIRVE GKLSKSFVEE IACGAYHVAV
0601: LTSRTEVFTW GKGANGRLGH GDTNDRNTPT LVEALKDKQV KSIACGTNFT AAICLHKWVS GVDQSMCSGC RVPFNFKRKR HNCYNCGLVF CHSCSNKKSV
0701: KASMAPNPNK PYRVCDNCFN KIRKTTETDS SSQSSMSRRG SLNQGWSLEF NGKDDKLDSR SHNQLARFSS MESLKQVDSR SSKKNKKLEF NSSRVSPAPN
0801: GGSQWGAMNI SKSFNPGFGS SKKFFSASVP GSRIVSRATS PISRRPSPPR STTPTPTLGG LSSPKMVVDD AKRINDNLSQ EVVKLRSQVE NLTRKAQLQE
0901: VELERTTKQL KEAIAIASEE TAKCKAAKEV IKSLTAQLKD MAERLPVGAS RNVRSPPSLA SFGLNPGSND LTNASFDRLN IQATSPESDS TGSTNQILSN
1001: GSSTITNRSA GHIKHSQSDA ISRNGNKTKD NETEWVEQDE PGVYITLTSL PGGVIDLKRV RFSRKRFSEK QAEQWWAENR ARVYEQYNVR MIDKSTIGVG
1101: SEDMAH

Best Arabidopsis Sequence Match ( AT5G19420.1 )
(BLAST)

0001: MSRNGRMTPS DLSRAGPVTR DIEQAITALK KGAYLLKYGR RGKPKFCPFR LSNDESVLIW FSGKEEKHLK LSHVSRIISG QRTPIFQRYP RPEKEYQSFS
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.