CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69375	Soybean	nucleus	90.94	86.63
VIT_01s0026g01520.t01	Wine grape	cytosol	43.52	61.87
CDY69131	Canola	cytosol	35.17	61.68
CDY46423	Canola	cytosol	40.67	60.42
Bra016304.1-P	Field mustard	cytosol	38.9	59.35
CDY16215	Canola	cytosol	40.5	59.07
AT1G27060.1	Thale cress	cytosol	39.96	58.29
Bra024664.1-P	Field mustard	cytosol	36.41	57.1
PGSC0003DMT400045467	Potato	cytosol	39.61	56.17
Solyc05g006940.2.1	Tomato	cytosol	38.72	55.33
GSMUA_Achr6P29750_001	Banana	cytosol	35.52	50.38
Os01t0777800-01	Rice	cytosol	32.68	45.89
OQU87663	Sorghum	cytosol	32.86	45.79
Zm00001d043280_P001	Maize	cytosol	32.86	45.34
TraesCS3D01G312300.1	Wheat	cytosol	32.5	44.96
TraesCS3A01G319000.1	Wheat	cytosol	32.68	44.88
TraesCS3B01G347100.2	Wheat	cytosol	32.33	44.72
HORVU3Hr1G076310.2	Barley	cytosol, mitochondrion, nucleus	34.28	42.51
CDY14709	Canola	nucleus	46.36	37.77
KRG93861	Soybean	nucleus	17.58	25.06
KRH53977	Soybean	cytosol, mitochondrion, nucleus	14.03	24.69
KRH59606	Soybean	cytosol	19.01	24.49
KRH63955	Soybean	mitochondrion	17.76	23.98
KRH53944	Soybean	plastid	19.36	23.0
KRH63996	Soybean	nucleus	19.01	22.2
KRH40960	Soybean	cytosol	13.14	21.89
KRH22127	Soybean	cytosol	17.94	20.82
KRH08750	Soybean	cytosol	23.09	20.41
KRH46563	Soybean	mitochondrion	15.81	20.05
KRH27216	Soybean	cytosol	17.94	20.0
KRH30228	Soybean	cytosol	13.85	19.16
KRH45102	Soybean	cytosol, nucleus, peroxisome	15.81	18.78
KRH01383	Soybean	cytosol	15.28	18.14
KRG97505	Soybean	cytosol	16.7	17.57
KRH31377	Soybean	cytosol	16.52	17.51
KRH49501	Soybean	cytosol	5.15	16.76
KRH59226	Soybean	cytosol	15.45	16.29
KRH45886	Soybean	nucleus	23.62	13.97
KRG99112	Soybean	cytosol	23.45	13.47
KRG99075	Soybean	nucleus	25.58	13.02
KRH45937	Soybean	nucleus	25.58	12.98
KRH14571	Soybean	nucleus	25.22	12.83
KRH73555	Soybean	nucleus	25.22	12.82
KRH69117	Soybean	cytosol	23.27	12.15
KRH31700	Soybean	cytosol	23.27	12.15
KRH70333	Soybean	cytosol	23.27	11.7
KRG91629	Soybean	cytosol	22.56	11.57
KRH35179	Soybean	cytosol	22.74	11.43
KRH00393	Soybean	cytosol	21.49	11.32
KRG98005	Soybean	cytosol	21.49	11.31
KRH30884	Soybean	cytosol	21.49	11.27
KRH40796	Soybean	cytosol	14.92	11.2
KRH65503	Soybean	cytosol, mitochondrion, nucleus	20.43	10.99
KRH08736	Soybean	endoplasmic reticulum	10.83	8.75
KRH30227	Soybean	cytosol	4.8	5.99

Protein Annotations

Gene3D:2.130.10.30	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A0R0L6A0	EMBL:ACUP02000066	EnsemblPlantsGene:GLYMA_01G041600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000408	InterPro:IPR000504
InterPro:IPR009091	InterPro:IPR012677	EnsemblPlants:KRH74759	ProteinID:KRH74759	ProteinID:KRH74759.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00415	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50102
PANTHER:PTHR22870	PANTHER:PTHR22870:SF303	InterPro:RBD_domain_sf	InterPro:RCC1/BLIP-II	InterPro:RRM_dom	InterPro:Reg_chr_condens
SMART:SM00360	SUPFAM:SSF50985	SUPFAM:SSF54928	UniParc:UPI0006EDC7FB	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:4490538..4496387

Molecular Weight (calculated)

59983.0 Da

IEP (calculated)

6.997

GRAVY (calculated)

-0.190

Length

563 amino acids

Sequence
(BLAST)

001: MSRKRDRSAY FSRHDAAKRR LPLPEPAEEE TPTMRPAPPS AVVVMGLPQD CSVLDLKSRF EIYGAISRIR IDRDAVGYIT YRTKDSADAA IAAGLDPTFG
101: ITVNSKMVQV LWATDPLAMW REGVGNSRNK GSMSKLVRAE VPLSKHGRGN RLASPIGNTK LSEASSGSSV LEVSFKGREI NEDDKDESEQ RVWSWGAGTE
201: GQLGTKILQD EHFPQLLHQP SLSSISSLAC GGAHVIALTS AGKVLSWGRG NSGQLGHGLV VSNSLYPKAV TSLDGYFITH VSAGWGHSGF VSDNGCVFTC
301: GDGSFGQLGH GDHASHCSPV KVSCFVDQHV EQVACGMRHS LVLLKDCTGN QVYGFGSGKR GQLGVSNDRV KSVNVPKVVS GFEGVEIAGI AANGDHSAAV
401: SVDGHVYTWG RGFKGFEDAR VPQCLNSSLN FTKVALGWNH ALAMSGEGEV CMLGGNHLGV LSDLQNISPA KHLPHLREVN LEKVPGLDGT KITDIATGAE
501: HSVIVTEHGE IKTWGWGEHG QLGLGDTRDR ISPVTVSLGY DLNEAASVIV FCGSGFTFAV TMP

Best Arabidopsis Sequence Match ( AT1G27060.1 )
(BLAST)

001: MAEHGETQAD EEEEEQVWSW GAGTDGQLGT TKLQDELLPQ LLSLTSLPSI SMLACGGAHV IALTSGGKVF TWGRGSSGQL GHGDILNITL PKLVSFFDDS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS

Arabidopsis Description

At1g27060 [Source:UniProtKB/TrEMBL;Acc:A2RVN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.